Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02330

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02320 and CSW01_02325 are separated by 71 nucleotidesCSW01_02325 and CSW01_02330 are separated by 13 nucleotidesCSW01_02330 and CSW01_02335 overlap by 11 nucleotides CSW01_02320: CSW01_02320 - Co2+/Mg2+ efflux protein ApaG, at 470,012 to 470,392 _02320 CSW01_02325: CSW01_02325 - ribosomal RNA small subunit methyltransferase A, at 470,464 to 471,279 _02325 CSW01_02330: CSW01_02330 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 471,293 to 472,285 _02330 CSW01_02335: CSW01_02335 - chaperone SurA, at 472,275 to 473,570 _02335 Position (kb) 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1at 470.299 kb on - strand, within CSW01_02320at 470.300 kb on + strand, within CSW01_02320at 470.414 kb on - strandat 470.414 kb on - strandat 470.495 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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470,299 - CSW01_02320 0.75 -0.6
470,300 + CSW01_02320 0.76 -0.5
470,414 - -3.0
470,414 - -3.1
470,495 - -3.5

Or see this region's nucleotide sequence