Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02180 and CSW01_02185 are separated by 167 nucleotides CSW01_02185 and CSW01_02190 are separated by 56 nucleotides CSW01_02190 and CSW01_02195 overlap by 14 nucleotides
CSW01_02180: CSW01_02180 - MSHA biogenesis protein MshQ, at 436,970 to 440,728
_02180
CSW01_02185: CSW01_02185 - rod shape-determining protein, at 440,896 to 441,939
_02185
CSW01_02190: CSW01_02190 - rod shape-determining protein MreC, at 441,996 to 442,886
_02190
CSW01_02195: CSW01_02195 - rod shape-determining protein MreD, at 442,873 to 443,361
_02195
Position (kb) 440
441
442 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 439.917 kb on - strand, within CSW01_02180 at 439.917 kb on - strand, within CSW01_02180 at 439.990 kb on + strand, within CSW01_02180 at 439.998 kb on - strand, within CSW01_02180 at 440.019 kb on - strand, within CSW01_02180 at 440.084 kb on + strand, within CSW01_02180 at 440.094 kb on + strand, within CSW01_02180 at 440.094 kb on + strand, within CSW01_02180 at 440.094 kb on + strand, within CSW01_02180 at 440.100 kb on + strand, within CSW01_02180 at 440.102 kb on - strand, within CSW01_02180 at 440.133 kb on - strand, within CSW01_02180 at 440.137 kb on + strand, within CSW01_02180 at 440.145 kb on - strand, within CSW01_02180 at 440.234 kb on - strand, within CSW01_02180 at 440.239 kb on - strand, within CSW01_02180 at 440.248 kb on + strand, within CSW01_02180 at 440.248 kb on + strand, within CSW01_02180 at 440.275 kb on + strand, within CSW01_02180 at 440.289 kb on + strand, within CSW01_02180 at 440.299 kb on + strand, within CSW01_02180 at 440.299 kb on + strand, within CSW01_02180 at 440.305 kb on - strand, within CSW01_02180 at 440.319 kb on + strand, within CSW01_02180 at 440.332 kb on + strand, within CSW01_02180 at 440.332 kb on + strand, within CSW01_02180 at 440.364 kb on - strand at 440.364 kb on - strand at 440.375 kb on + strand at 440.375 kb on + strand at 440.375 kb on + strand at 440.383 kb on + strand at 440.383 kb on + strand at 440.383 kb on - strand at 440.388 kb on + strand at 440.468 kb on - strand at 440.480 kb on + strand at 440.488 kb on - strand at 440.488 kb on - strand at 440.522 kb on + strand at 440.522 kb on + strand at 440.562 kb on + strand at 440.562 kb on + strand at 440.657 kb on + strand at 440.702 kb on - strand at 441.934 kb on + strand at 441.934 kb on + strand at 441.934 kb on + strand at 441.934 kb on + strand at 441.934 kb on + strand at 441.946 kb on + strand at 441.946 kb on + strand at 441.972 kb on + strand at 441.977 kb on + strand at 442.868 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 439,917 - CSW01_02180 0.78 -0.2 439,917 - CSW01_02180 0.78 -2.5 439,990 + CSW01_02180 0.80 +0.1 439,998 - CSW01_02180 0.81 -0.1 440,019 - CSW01_02180 0.81 -2.1 440,084 + CSW01_02180 0.83 -1.3 440,094 + CSW01_02180 0.83 -0.7 440,094 + CSW01_02180 0.83 -0.2 440,094 + CSW01_02180 0.83 +0.2 440,100 + CSW01_02180 0.83 +0.3 440,102 - CSW01_02180 0.83 +0.6 440,133 - CSW01_02180 0.84 -0.2 440,137 + CSW01_02180 0.84 +0.7 440,145 - CSW01_02180 0.84 -1.3 440,234 - CSW01_02180 0.87 +0.8 440,239 - CSW01_02180 0.87 -3.6 440,248 + CSW01_02180 0.87 -3.8 440,248 + CSW01_02180 0.87 -0.4 440,275 + CSW01_02180 0.88 +1.5 440,289 + CSW01_02180 0.88 -4.4 440,299 + CSW01_02180 0.89 +0.9 440,299 + CSW01_02180 0.89 -3.8 440,305 - CSW01_02180 0.89 -2.5 440,319 + CSW01_02180 0.89 +1.2 440,332 + CSW01_02180 0.89 -0.3 440,332 + CSW01_02180 0.89 -0.0 440,364 - +0.0 440,364 - -0.4 440,375 + -0.3 440,375 + -3.8 440,375 + +0.4 440,383 + +0.5 440,383 + -0.2 440,383 - +1.6 440,388 + -1.9 440,468 - -1.5 440,480 + -2.6 440,488 - +0.3 440,488 - +0.8 440,522 + +0.7 440,522 + -1.4 440,562 + -1.7 440,562 + -3.0 440,657 + +1.4 440,702 - +2.1 441,934 + +0.2 441,934 + -3.3 441,934 + -1.0 441,934 + +1.3 441,934 + +0.8 441,946 + -1.3 441,946 + +1.0 441,972 + +0.7 441,977 + -1.6 442,868 + -0.3
Or see this region's nucleotide sequence