Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01505 and CSW01_01510 are separated by 14 nucleotides CSW01_01510 and CSW01_01515 are separated by 56 nucleotides CSW01_01515 and CSW01_01520 are separated by 379 nucleotides
CSW01_01505: CSW01_01505 - acetyl-CoA carboxylase biotin carboxylase subunit, at 301,153 to 302,496
_01505
CSW01_01510: CSW01_01510 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 302,511 to 302,972
_01510
CSW01_01515: CSW01_01515 - type II 3-dehydroquinate dehydratase, at 303,029 to 303,481
_01515
CSW01_01520: CSW01_01520 - acetyl-coenzyme A synthetase, at 303,861 to 305,810
_01520
Position (kb) 302
303 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 303.206 kb on - strand, within CSW01_01515 at 303.206 kb on - strand, within CSW01_01515 at 303.229 kb on - strand, within CSW01_01515 at 303.238 kb on - strand, within CSW01_01515 at 303.243 kb on - strand, within CSW01_01515 at 303.393 kb on - strand, within CSW01_01515 at 303.393 kb on - strand, within CSW01_01515 at 303.393 kb on - strand, within CSW01_01515 at 303.393 kb on - strand, within CSW01_01515 at 303.393 kb on - strand, within CSW01_01515 at 303.417 kb on - strand, within CSW01_01515 at 303.637 kb on - strand at 303.659 kb on + strand at 303.703 kb on + strand at 303.712 kb on + strand at 303.730 kb on - strand at 303.764 kb on - strand at 303.783 kb on - strand at 303.813 kb on + strand at 303.820 kb on - strand at 303.828 kb on + strand at 303.842 kb on + strand at 303.848 kb on + strand at 303.917 kb on + strand at 303.917 kb on + strand at 303.917 kb on + strand at 303.917 kb on + strand at 303.917 kb on + strand at 303.925 kb on - strand at 303.925 kb on - strand at 303.925 kb on - strand at 303.925 kb on - strand at 303.925 kb on - strand at 303.925 kb on - strand at 303.925 kb on - strand at 303.925 kb on - strand at 303.925 kb on - strand at 303.925 kb on - strand at 303.928 kb on + strand at 303.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 303,206 - CSW01_01515 0.39 -1.5 303,206 - CSW01_01515 0.39 -2.3 303,229 - CSW01_01515 0.44 +1.6 303,238 - CSW01_01515 0.46 -1.2 303,243 - CSW01_01515 0.47 +0.8 303,393 - CSW01_01515 0.80 -2.1 303,393 - CSW01_01515 0.80 +1.0 303,393 - CSW01_01515 0.80 -1.0 303,393 - CSW01_01515 0.80 -1.2 303,393 - CSW01_01515 0.80 +1.4 303,417 - CSW01_01515 0.86 +0.7 303,637 - -0.5 303,659 + -0.1 303,703 + +0.6 303,712 + +0.4 303,730 - -0.1 303,764 - +0.5 303,783 - -0.6 303,813 + +0.6 303,820 - +0.6 303,828 + +1.7 303,842 + -3.9 303,848 + +0.9 303,917 + +0.2 303,917 + +0.9 303,917 + -0.3 303,917 + +0.5 303,917 + -0.4 303,925 - -0.1 303,925 - +1.6 303,925 - -2.8 303,925 - +0.2 303,925 - +1.1 303,925 - +1.8 303,925 - +1.7 303,925 - -1.5 303,925 - -1.0 303,925 - +0.9 303,928 + +0.4 303,928 + +0.5
Or see this region's nucleotide sequence