Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01495

Experiment: ICP1_phage_2.3_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_01485 and CSW01_01490 are separated by 138 nucleotidesCSW01_01490 and CSW01_01495 are separated by 23 nucleotidesCSW01_01495 and CSW01_01500 are separated by 112 nucleotides CSW01_01485: CSW01_01485 - transcriptional regulator, at 297,492 to 298,490 _01485 CSW01_01490: CSW01_01490 - Fis family transcriptional regulator, at 298,629 to 298,925 _01490 CSW01_01495: CSW01_01495 - tRNA dihydrouridine synthase DusB, at 298,949 to 299,944 _01495 CSW01_01500: CSW01_01500 - 50S ribosomal protein L11 methyltransferase, at 300,057 to 300,944 _01500 Position (kb) 298 299 300Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 298.037 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.115 kb on + strand, within CSW01_01485at 298.115 kb on + strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.130 kb on + strand, within CSW01_01485at 298.224 kb on - strand, within CSW01_01485at 298.229 kb on + strand, within CSW01_01485at 298.237 kb on - strand, within CSW01_01485at 298.237 kb on - strand, within CSW01_01485at 298.353 kb on - strand, within CSW01_01485at 298.377 kb on - strand, within CSW01_01485at 298.405 kb on - strandat 298.550 kb on - strandat 298.551 kb on - strandat 298.553 kb on + strandat 298.563 kb on - strandat 298.635 kb on - strandat 298.664 kb on + strand, within CSW01_01490at 298.683 kb on + strand, within CSW01_01490at 298.727 kb on - strand, within CSW01_01490at 298.732 kb on - strand, within CSW01_01490at 298.795 kb on - strand, within CSW01_01490at 298.845 kb on - strand, within CSW01_01490at 298.931 kb on + strandat 298.934 kb on - strandat 298.939 kb on - strandat 298.939 kb on - strandat 299.092 kb on + strand, within CSW01_01495at 299.100 kb on - strand, within CSW01_01495at 299.106 kb on + strand, within CSW01_01495at 299.114 kb on - strand, within CSW01_01495at 299.114 kb on - strand, within CSW01_01495at 299.147 kb on + strand, within CSW01_01495at 299.155 kb on - strand, within CSW01_01495at 299.181 kb on + strand, within CSW01_01495at 299.183 kb on + strand, within CSW01_01495at 299.209 kb on - strand, within CSW01_01495at 299.231 kb on + strand, within CSW01_01495at 299.239 kb on - strand, within CSW01_01495at 299.276 kb on + strand, within CSW01_01495at 299.286 kb on - strand, within CSW01_01495at 299.310 kb on + strand, within CSW01_01495at 299.336 kb on + strand, within CSW01_01495at 299.344 kb on - strand, within CSW01_01495at 299.356 kb on + strand, within CSW01_01495at 299.364 kb on - strand, within CSW01_01495at 299.364 kb on - strand, within CSW01_01495at 299.366 kb on + strand, within CSW01_01495at 299.374 kb on - strand, within CSW01_01495at 299.374 kb on - strand, within CSW01_01495at 299.382 kb on + strand, within CSW01_01495at 299.390 kb on - strand, within CSW01_01495at 299.404 kb on - strand, within CSW01_01495at 299.438 kb on + strand, within CSW01_01495at 299.438 kb on + strand, within CSW01_01495at 299.446 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.578 kb on - strand, within CSW01_01495at 299.586 kb on - strand, within CSW01_01495at 299.666 kb on - strand, within CSW01_01495at 299.681 kb on - strand, within CSW01_01495at 299.687 kb on - strand, within CSW01_01495at 299.704 kb on + strand, within CSW01_01495at 299.734 kb on - strand, within CSW01_01495at 299.750 kb on - strand, within CSW01_01495at 299.781 kb on + strand, within CSW01_01495at 299.789 kb on - strand, within CSW01_01495at 299.789 kb on - strand, within CSW01_01495at 299.920 kb on + strandat 300.018 kb on + strandat 300.050 kb on + strandat 300.050 kb on + strandat 300.058 kb on - strandat 300.124 kb on - strandat 300.196 kb on + strand, within CSW01_01500at 300.196 kb on + strand, within CSW01_01500at 300.204 kb on - strand, within CSW01_01500at 300.236 kb on - strand, within CSW01_01500at 300.238 kb on + strand, within CSW01_01500at 300.244 kb on + strand, within CSW01_01500at 300.252 kb on - strand, within CSW01_01500at 300.265 kb on + strand, within CSW01_01500at 300.340 kb on + strand, within CSW01_01500at 300.348 kb on - strand, within CSW01_01500at 300.390 kb on - strand, within CSW01_01500at 300.400 kb on + strand, within CSW01_01500at 300.473 kb on + strand, within CSW01_01500at 300.481 kb on - strand, within CSW01_01500at 300.481 kb on - strand, within CSW01_01500at 300.492 kb on + strand, within CSW01_01500at 300.499 kb on - strand, within CSW01_01500at 300.499 kb on - strand, within CSW01_01500at 300.501 kb on - strand, within CSW01_01500at 300.501 kb on - strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.516 kb on - strand, within CSW01_01500at 300.524 kb on - strand, within CSW01_01500at 300.534 kb on + strand, within CSW01_01500at 300.535 kb on + strand, within CSW01_01500at 300.581 kb on - strand, within CSW01_01500at 300.590 kb on + strand, within CSW01_01500at 300.598 kb on - strand, within CSW01_01500at 300.604 kb on - strand, within CSW01_01500at 300.609 kb on - strand, within CSW01_01500at 300.628 kb on + strand, within CSW01_01500at 300.636 kb on - strand, within CSW01_01500at 300.747 kb on + strand, within CSW01_01500at 300.755 kb on - strand, within CSW01_01500at 300.765 kb on - strand, within CSW01_01500at 300.765 kb on - strand, within CSW01_01500at 300.765 kb on - strand, within CSW01_01500at 300.784 kb on - strand, within CSW01_01500at 300.807 kb on + strand, within CSW01_01500at 300.809 kb on + strand, within CSW01_01500at 300.814 kb on + strand, within CSW01_01500at 300.852 kb on + strand, within CSW01_01500at 300.852 kb on + strand, within CSW01_01500at 300.860 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
remove
298,037 + CSW01_01485 0.55 -3.0
298,061 + CSW01_01485 0.57 -1.2
298,061 + CSW01_01485 0.57 -3.1
298,061 + CSW01_01485 0.57 -2.1
298,061 + CSW01_01485 0.57 -1.8
298,069 - CSW01_01485 0.58 -3.0
298,069 - CSW01_01485 0.58 -2.1
298,069 - CSW01_01485 0.58 -3.1
298,115 + CSW01_01485 0.62 -1.8
298,115 + CSW01_01485 0.62 -2.7
298,123 - CSW01_01485 0.63 -1.4
298,123 - CSW01_01485 0.63 -0.4
298,123 - CSW01_01485 0.63 -2.3
298,130 + CSW01_01485 0.64 -1.7
298,224 - CSW01_01485 0.73 -1.7
298,229 + CSW01_01485 0.74 -2.6
298,237 - CSW01_01485 0.75 -2.1
298,237 - CSW01_01485 0.75 -2.2
298,353 - CSW01_01485 0.86 -1.4
298,377 - CSW01_01485 0.89 -1.8
298,405 - -4.2
298,550 - +1.5
298,551 - -1.7
298,553 + +0.9
298,563 - -0.1
298,635 - -0.7
298,664 + CSW01_01490 0.12 -1.6
298,683 + CSW01_01490 0.18 -0.7
298,727 - CSW01_01490 0.33 -1.9
298,732 - CSW01_01490 0.35 -2.1
298,795 - CSW01_01490 0.56 -1.8
298,845 - CSW01_01490 0.73 -2.5
298,931 + -2.6
298,934 - +0.3
298,939 - -0.6
298,939 - -3.5
299,092 + CSW01_01495 0.14 -0.7
299,100 - CSW01_01495 0.15 -3.2
299,106 + CSW01_01495 0.16 -2.2
299,114 - CSW01_01495 0.17 -0.1
299,114 - CSW01_01495 0.17 +1.5
299,147 + CSW01_01495 0.20 -2.8
299,155 - CSW01_01495 0.21 -3.0
299,181 + CSW01_01495 0.23 -0.6
299,183 + CSW01_01495 0.23 -0.2
299,209 - CSW01_01495 0.26 -0.3
299,231 + CSW01_01495 0.28 -3.1
299,239 - CSW01_01495 0.29 -0.8
299,276 + CSW01_01495 0.33 +0.1
299,286 - CSW01_01495 0.34 +1.2
299,310 + CSW01_01495 0.36 -1.5
299,336 + CSW01_01495 0.39 -0.7
299,344 - CSW01_01495 0.40 +1.2
299,356 + CSW01_01495 0.41 -0.8
299,364 - CSW01_01495 0.42 -3.5
299,364 - CSW01_01495 0.42 +0.4
299,366 + CSW01_01495 0.42 -0.7
299,374 - CSW01_01495 0.43 +2.1
299,374 - CSW01_01495 0.43 +0.7
299,382 + CSW01_01495 0.43 -1.5
299,390 - CSW01_01495 0.44 +1.2
299,404 - CSW01_01495 0.46 -4.0
299,438 + CSW01_01495 0.49 -2.1
299,438 + CSW01_01495 0.49 -2.5
299,446 - CSW01_01495 0.50 +1.5
299,568 - CSW01_01495 0.62 +1.5
299,568 - CSW01_01495 0.62 -2.0
299,568 - CSW01_01495 0.62 -0.3
299,568 - CSW01_01495 0.62 +0.7
299,578 - CSW01_01495 0.63 -1.2
299,586 - CSW01_01495 0.64 +2.3
299,666 - CSW01_01495 0.72 +1.3
299,681 - CSW01_01495 0.73 -1.0
299,687 - CSW01_01495 0.74 -1.0
299,704 + CSW01_01495 0.76 -2.6
299,734 - CSW01_01495 0.79 -3.2
299,750 - CSW01_01495 0.80 +0.9
299,781 + CSW01_01495 0.84 -0.4
299,789 - CSW01_01495 0.84 +0.8
299,789 - CSW01_01495 0.84 -2.3
299,920 + +1.9
300,018 + -1.1
300,050 + -0.9
300,050 + -0.1
300,058 - -0.2
300,124 - -3.0
300,196 + CSW01_01500 0.16 -0.7
300,196 + CSW01_01500 0.16 +0.8
300,204 - CSW01_01500 0.17 -3.1
300,236 - CSW01_01500 0.20 -3.5
300,238 + CSW01_01500 0.20 +1.5
300,244 + CSW01_01500 0.21 -1.7
300,252 - CSW01_01500 0.22 -2.6
300,265 + CSW01_01500 0.23 -1.3
300,340 + CSW01_01500 0.32 -2.2
300,348 - CSW01_01500 0.33 +0.0
300,390 - CSW01_01500 0.38 +0.2
300,400 + CSW01_01500 0.39 +0.3
300,473 + CSW01_01500 0.47 -1.7
300,481 - CSW01_01500 0.48 -0.5
300,481 - CSW01_01500 0.48 -3.2
300,492 + CSW01_01500 0.49 -0.2
300,499 - CSW01_01500 0.50 +0.3
300,499 - CSW01_01500 0.50 +0.0
300,501 - CSW01_01500 0.50 -3.0
300,501 - CSW01_01500 0.50 -2.5
300,508 + CSW01_01500 0.51 -0.6
300,508 + CSW01_01500 0.51 -0.0
300,508 + CSW01_01500 0.51 +0.5
300,508 + CSW01_01500 0.51 +1.1
300,508 + CSW01_01500 0.51 +0.0
300,516 - CSW01_01500 0.52 +1.7
300,524 - CSW01_01500 0.53 +0.6
300,534 + CSW01_01500 0.54 +1.1
300,535 + CSW01_01500 0.54 +1.0
300,581 - CSW01_01500 0.59 -1.7
300,590 + CSW01_01500 0.60 +1.8
300,598 - CSW01_01500 0.61 +0.2
300,604 - CSW01_01500 0.62 +1.6
300,609 - CSW01_01500 0.62 +0.9
300,628 + CSW01_01500 0.64 -0.0
300,636 - CSW01_01500 0.65 +0.8
300,747 + CSW01_01500 0.78 +1.5
300,755 - CSW01_01500 0.79 +0.3
300,765 - CSW01_01500 0.80 -1.9
300,765 - CSW01_01500 0.80 +0.7
300,765 - CSW01_01500 0.80 -0.3
300,784 - CSW01_01500 0.82 -1.7
300,807 + CSW01_01500 0.84 -0.1
300,809 + CSW01_01500 0.85 +1.1
300,814 + CSW01_01500 0.85 +1.0
300,852 + CSW01_01500 0.90 +0.2
300,852 + CSW01_01500 0.90 +2.7
300,860 - -1.2

Or see this region's nucleotide sequence