Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00820 and CSW01_00825 are separated by 108 nucleotides CSW01_00825 and CSW01_00830 are separated by 47 nucleotides CSW01_00830 and CSW01_00835 are separated by 110 nucleotides
CSW01_00820: CSW01_00820 - 23S ribosomal RNA, at 153,020 to 155,935
_00820
CSW01_00825: CSW01_00825 - 5S ribosomal RNA, at 156,044 to 156,159
_00825
CSW01_00830: CSW01_00830 - tRNA-Ser, at 156,207 to 156,297
_00830
CSW01_00835: CSW01_00835 - HTH-type transcriptional activator IlvY, at 156,408 to 157,304
_00835
Position (kb) 156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 156.008 kb on - strand at 156.511 kb on + strand, within CSW01_00835 at 156.699 kb on - strand, within CSW01_00835 at 156.706 kb on + strand, within CSW01_00835 at 156.722 kb on - strand, within CSW01_00835 at 156.765 kb on - strand, within CSW01_00835 at 156.770 kb on + strand, within CSW01_00835 at 156.925 kb on + strand, within CSW01_00835 at 156.925 kb on + strand, within CSW01_00835 at 156.980 kb on + strand, within CSW01_00835 at 156.988 kb on - strand, within CSW01_00835 at 156.992 kb on + strand, within CSW01_00835 at 157.017 kb on + strand, within CSW01_00835 at 157.025 kb on - strand, within CSW01_00835 at 157.091 kb on - strand, within CSW01_00835 at 157.136 kb on + strand, within CSW01_00835 at 157.136 kb on + strand, within CSW01_00835 at 157.141 kb on + strand, within CSW01_00835 at 157.142 kb on - strand, within CSW01_00835 at 157.142 kb on - strand, within CSW01_00835 at 157.144 kb on - strand, within CSW01_00835 at 157.144 kb on - strand, within CSW01_00835 at 157.144 kb on - strand, within CSW01_00835 at 157.144 kb on - strand, within CSW01_00835 at 157.220 kb on + strand at 157.265 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 156,008 - -2.3 156,511 + CSW01_00835 0.11 +2.4 156,699 - CSW01_00835 0.32 -3.4 156,706 + CSW01_00835 0.33 -3.2 156,722 - CSW01_00835 0.35 +0.0 156,765 - CSW01_00835 0.40 +0.8 156,770 + CSW01_00835 0.40 +0.2 156,925 + CSW01_00835 0.58 -0.9 156,925 + CSW01_00835 0.58 -0.2 156,980 + CSW01_00835 0.64 +0.8 156,988 - CSW01_00835 0.65 -0.3 156,992 + CSW01_00835 0.65 -1.3 157,017 + CSW01_00835 0.68 +1.3 157,025 - CSW01_00835 0.69 -0.7 157,091 - CSW01_00835 0.76 -0.2 157,136 + CSW01_00835 0.81 -1.6 157,136 + CSW01_00835 0.81 -0.4 157,141 + CSW01_00835 0.82 -0.8 157,142 - CSW01_00835 0.82 -0.0 157,142 - CSW01_00835 0.82 -1.8 157,144 - CSW01_00835 0.82 -1.2 157,144 - CSW01_00835 0.82 +0.2 157,144 - CSW01_00835 0.82 -2.3 157,144 - CSW01_00835 0.82 +0.8 157,220 + -3.2 157,265 + -0.2
Or see this region's nucleotide sequence