Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00685 and CSW01_00690 are separated by 74 nucleotides CSW01_00690 and CSW01_00695 are separated by 19 nucleotides CSW01_00695 and CSW01_00700 are separated by 179 nucleotides CSW01_00700 and CSW01_00705 are separated by 169 nucleotides
CSW01_00685: CSW01_00685 - lysophospholipase, at 129,658 to 130,674
_00685
CSW01_00690: CSW01_00690 - homoserine/homoserine lactone efflux protein, at 130,749 to 131,366
_00690
CSW01_00695: CSW01_00695 - EAL domain-containing protein, at 131,386 to 132,612
_00695
CSW01_00700: CSW01_00700 - DNA starvation/stationary phase protection protein, at 132,792 to 133,262
_00700
CSW01_00705: CSW01_00705 - DUF2500 domain-containing protein, at 133,432 to 133,761
_00705
Position (kb) 131
132
133 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 130.401 kb on - strand, within CSW01_00685 at 130.475 kb on + strand, within CSW01_00685 at 130.483 kb on - strand, within CSW01_00685 at 130.520 kb on + strand, within CSW01_00685 at 130.612 kb on + strand at 130.620 kb on - strand at 130.669 kb on + strand at 130.677 kb on - strand at 130.677 kb on - strand at 130.677 kb on - strand at 130.710 kb on - strand at 130.711 kb on - strand at 130.713 kb on + strand at 130.721 kb on - strand at 130.819 kb on + strand, within CSW01_00690 at 130.827 kb on - strand, within CSW01_00690 at 130.839 kb on + strand, within CSW01_00690 at 130.839 kb on + strand, within CSW01_00690 at 130.839 kb on + strand, within CSW01_00690 at 130.839 kb on + strand, within CSW01_00690 at 130.840 kb on + strand, within CSW01_00690 at 130.847 kb on - strand, within CSW01_00690 at 130.847 kb on - strand, within CSW01_00690 at 130.852 kb on + strand, within CSW01_00690 at 130.864 kb on + strand, within CSW01_00690 at 130.864 kb on + strand, within CSW01_00690 at 130.864 kb on + strand, within CSW01_00690 at 130.872 kb on - strand, within CSW01_00690 at 130.872 kb on - strand, within CSW01_00690 at 130.921 kb on + strand, within CSW01_00690 at 130.930 kb on - strand, within CSW01_00690 at 131.084 kb on + strand, within CSW01_00690 at 131.084 kb on + strand, within CSW01_00690 at 131.084 kb on + strand, within CSW01_00690 at 131.084 kb on + strand, within CSW01_00690 at 131.089 kb on + strand, within CSW01_00690 at 131.089 kb on + strand, within CSW01_00690 at 131.092 kb on - strand, within CSW01_00690 at 131.092 kb on - strand, within CSW01_00690 at 131.092 kb on - strand, within CSW01_00690 at 131.102 kb on - strand, within CSW01_00690 at 131.103 kb on + strand, within CSW01_00690 at 131.181 kb on + strand, within CSW01_00690 at 131.186 kb on + strand, within CSW01_00690 at 131.186 kb on + strand, within CSW01_00690 at 131.194 kb on - strand, within CSW01_00690 at 131.223 kb on - strand, within CSW01_00690 at 131.234 kb on - strand, within CSW01_00690 at 131.335 kb on + strand at 131.335 kb on + strand at 131.372 kb on + strand at 131.372 kb on + strand at 131.380 kb on - strand at 131.385 kb on + strand at 131.388 kb on + strand at 131.396 kb on - strand at 131.426 kb on - strand at 131.444 kb on + strand at 131.444 kb on + strand at 131.444 kb on + strand at 131.444 kb on + strand at 131.444 kb on + strand at 131.444 kb on + strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.488 kb on + strand at 131.493 kb on + strand at 131.498 kb on - strand at 131.556 kb on + strand, within CSW01_00695 at 131.587 kb on - strand, within CSW01_00695 at 131.603 kb on + strand, within CSW01_00695 at 131.674 kb on - strand, within CSW01_00695 at 131.696 kb on + strand, within CSW01_00695 at 131.706 kb on - strand, within CSW01_00695 at 131.713 kb on - strand, within CSW01_00695 at 131.732 kb on + strand, within CSW01_00695 at 131.835 kb on + strand, within CSW01_00695 at 131.847 kb on - strand, within CSW01_00695 at 131.861 kb on - strand, within CSW01_00695 at 131.929 kb on + strand, within CSW01_00695 at 131.937 kb on - strand, within CSW01_00695 at 131.972 kb on + strand, within CSW01_00695 at 131.980 kb on - strand, within CSW01_00695 at 131.980 kb on - strand, within CSW01_00695 at 131.980 kb on - strand, within CSW01_00695 at 131.982 kb on + strand, within CSW01_00695 at 131.991 kb on - strand, within CSW01_00695 at 131.993 kb on + strand, within CSW01_00695 at 131.998 kb on + strand, within CSW01_00695 at 131.998 kb on + strand, within CSW01_00695 at 132.001 kb on - strand, within CSW01_00695 at 132.047 kb on - strand, within CSW01_00695 at 132.074 kb on - strand, within CSW01_00695 at 132.083 kb on + strand, within CSW01_00695 at 132.095 kb on + strand, within CSW01_00695 at 132.095 kb on + strand, within CSW01_00695 at 132.128 kb on - strand, within CSW01_00695 at 132.128 kb on - strand, within CSW01_00695 at 132.166 kb on + strand, within CSW01_00695 at 132.166 kb on + strand, within CSW01_00695 at 132.176 kb on + strand, within CSW01_00695 at 132.184 kb on - strand, within CSW01_00695 at 132.184 kb on - strand, within CSW01_00695 at 132.184 kb on - strand, within CSW01_00695 at 132.184 kb on - strand, within CSW01_00695 at 132.184 kb on - strand, within CSW01_00695 at 132.184 kb on - strand, within CSW01_00695 at 132.233 kb on + strand, within CSW01_00695 at 132.275 kb on - strand, within CSW01_00695 at 132.302 kb on + strand, within CSW01_00695 at 132.428 kb on + strand, within CSW01_00695 at 132.428 kb on + strand, within CSW01_00695 at 132.444 kb on - strand, within CSW01_00695 at 132.473 kb on + strand, within CSW01_00695 at 132.481 kb on - strand, within CSW01_00695 at 132.481 kb on - strand, within CSW01_00695 at 132.509 kb on + strand at 132.509 kb on + strand at 132.509 kb on + strand at 132.509 kb on + strand at 132.509 kb on + strand at 132.509 kb on + strand at 132.509 kb on + strand at 132.514 kb on + strand at 132.514 kb on + strand at 132.514 kb on + strand at 132.517 kb on - strand at 132.517 kb on - strand at 132.517 kb on - strand at 132.517 kb on - strand at 132.522 kb on - strand at 132.522 kb on - strand at 132.522 kb on - strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.527 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.579 kb on + strand at 132.579 kb on + strand at 132.582 kb on - strand at 132.697 kb on + strand at 132.705 kb on - strand at 132.720 kb on + strand at 132.720 kb on + strand at 132.720 kb on + strand at 132.724 kb on - strand at 132.728 kb on - strand at 132.728 kb on - strand at 132.767 kb on - strand at 132.777 kb on + strand at 132.784 kb on + strand at 132.785 kb on - strand at 132.789 kb on + strand at 132.805 kb on + strand at 132.865 kb on - strand, within CSW01_00700 at 132.893 kb on + strand, within CSW01_00700 at 132.893 kb on + strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.911 kb on - strand, within CSW01_00700 at 132.946 kb on - strand, within CSW01_00700 at 132.963 kb on - strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.013 kb on + strand, within CSW01_00700 at 133.013 kb on + strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.090 kb on + strand, within CSW01_00700 at 133.090 kb on + strand, within CSW01_00700 at 133.098 kb on - strand, within CSW01_00700 at 133.215 kb on - strand, within CSW01_00700 at 133.270 kb on - strand at 133.308 kb on + strand at 133.361 kb on + strand at 133.430 kb on + strand at 133.438 kb on + strand at 133.446 kb on - strand at 133.484 kb on + strand, within CSW01_00705 at 133.501 kb on - strand, within CSW01_00705 at 133.510 kb on + strand, within CSW01_00705 at 133.527 kb on + strand, within CSW01_00705 at 133.563 kb on - strand, within CSW01_00705 at 133.594 kb on + strand, within CSW01_00705 at 133.608 kb on + strand, within CSW01_00705
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 130,401 - CSW01_00685 0.73 -1.7 130,475 + CSW01_00685 0.80 -1.8 130,483 - CSW01_00685 0.81 -1.8 130,520 + CSW01_00685 0.85 +1.0 130,612 + -2.5 130,620 - -3.0 130,669 + -0.7 130,677 - -0.5 130,677 - +1.1 130,677 - -4.5 130,710 - -0.8 130,711 - -0.2 130,713 + -3.5 130,721 - -1.4 130,819 + CSW01_00690 0.11 -0.3 130,827 - CSW01_00690 0.13 -3.2 130,839 + CSW01_00690 0.15 +0.4 130,839 + CSW01_00690 0.15 -2.5 130,839 + CSW01_00690 0.15 -0.4 130,839 + CSW01_00690 0.15 +0.1 130,840 + CSW01_00690 0.15 -2.1 130,847 - CSW01_00690 0.16 +1.3 130,847 - CSW01_00690 0.16 -0.2 130,852 + CSW01_00690 0.17 -1.0 130,864 + CSW01_00690 0.19 +1.0 130,864 + CSW01_00690 0.19 +0.1 130,864 + CSW01_00690 0.19 -2.9 130,872 - CSW01_00690 0.20 +1.0 130,872 - CSW01_00690 0.20 +0.5 130,921 + CSW01_00690 0.28 -0.2 130,930 - CSW01_00690 0.29 -2.0 131,084 + CSW01_00690 0.54 +0.2 131,084 + CSW01_00690 0.54 -3.4 131,084 + CSW01_00690 0.54 +0.3 131,084 + CSW01_00690 0.54 -2.6 131,089 + CSW01_00690 0.55 +0.3 131,089 + CSW01_00690 0.55 -0.1 131,092 - CSW01_00690 0.56 -0.6 131,092 - CSW01_00690 0.56 -2.3 131,092 - CSW01_00690 0.56 -0.7 131,102 - CSW01_00690 0.57 +0.8 131,103 + CSW01_00690 0.57 -0.7 131,181 + CSW01_00690 0.70 +0.0 131,186 + CSW01_00690 0.71 -2.7 131,186 + CSW01_00690 0.71 -0.3 131,194 - CSW01_00690 0.72 +0.8 131,223 - CSW01_00690 0.77 -4.0 131,234 - CSW01_00690 0.78 +0.4 131,335 + +0.2 131,335 + +0.6 131,372 + -1.3 131,372 + -0.2 131,380 - -1.1 131,385 + -0.6 131,388 + -0.4 131,396 - +0.2 131,426 - -1.6 131,444 + -4.1 131,444 + -2.0 131,444 + +1.0 131,444 + -1.4 131,444 + +0.8 131,444 + +0.7 131,452 - +0.0 131,452 - -1.4 131,452 - +0.7 131,452 - -1.8 131,452 - -0.8 131,488 + +0.7 131,493 + -1.2 131,498 - +0.0 131,556 + CSW01_00695 0.14 +0.8 131,587 - CSW01_00695 0.16 +0.3 131,603 + CSW01_00695 0.18 -2.3 131,674 - CSW01_00695 0.23 +0.4 131,696 + CSW01_00695 0.25 -0.8 131,706 - CSW01_00695 0.26 -0.3 131,713 - CSW01_00695 0.27 -0.5 131,732 + CSW01_00695 0.28 -0.8 131,835 + CSW01_00695 0.37 -2.0 131,847 - CSW01_00695 0.38 +0.2 131,861 - CSW01_00695 0.39 -1.4 131,929 + CSW01_00695 0.44 +0.6 131,937 - CSW01_00695 0.45 -2.7 131,972 + CSW01_00695 0.48 -1.6 131,980 - CSW01_00695 0.48 -1.3 131,980 - CSW01_00695 0.48 -2.8 131,980 - CSW01_00695 0.48 +0.2 131,982 + CSW01_00695 0.49 -0.4 131,991 - CSW01_00695 0.49 +0.4 131,993 + CSW01_00695 0.49 -2.4 131,998 + CSW01_00695 0.50 +1.3 131,998 + CSW01_00695 0.50 -0.8 132,001 - CSW01_00695 0.50 +1.1 132,047 - CSW01_00695 0.54 -3.0 132,074 - CSW01_00695 0.56 -0.7 132,083 + CSW01_00695 0.57 +1.1 132,095 + CSW01_00695 0.58 -1.9 132,095 + CSW01_00695 0.58 +0.7 132,128 - CSW01_00695 0.60 -1.2 132,128 - CSW01_00695 0.60 +0.9 132,166 + CSW01_00695 0.64 +1.2 132,166 + CSW01_00695 0.64 -1.9 132,176 + CSW01_00695 0.64 -0.1 132,184 - CSW01_00695 0.65 -3.0 132,184 - CSW01_00695 0.65 +0.3 132,184 - CSW01_00695 0.65 -1.8 132,184 - CSW01_00695 0.65 -1.4 132,184 - CSW01_00695 0.65 +0.1 132,184 - CSW01_00695 0.65 +0.8 132,233 + CSW01_00695 0.69 -1.0 132,275 - CSW01_00695 0.72 -1.0 132,302 + CSW01_00695 0.75 +0.9 132,428 + CSW01_00695 0.85 -0.1 132,428 + CSW01_00695 0.85 -2.4 132,444 - CSW01_00695 0.86 +0.6 132,473 + CSW01_00695 0.89 +0.3 132,481 - CSW01_00695 0.89 -2.4 132,481 - CSW01_00695 0.89 -2.8 132,509 + +0.2 132,509 + -0.8 132,509 + -1.1 132,509 + -1.3 132,509 + +0.5 132,509 + +0.4 132,509 + -2.4 132,514 + -2.1 132,514 + -2.9 132,514 + +0.6 132,517 - +0.5 132,517 - +0.8 132,517 - -3.1 132,517 - -2.6 132,522 - -2.0 132,522 - -1.1 132,522 - +0.3 132,524 + +0.7 132,524 + -1.9 132,524 + +2.2 132,524 + -3.7 132,524 + +0.4 132,524 + -0.0 132,524 + -4.2 132,524 + +1.5 132,524 + -3.6 132,524 + +0.6 132,524 + -1.3 132,524 + +0.5 132,524 + -0.3 132,527 - +2.1 132,532 - -2.5 132,532 - -1.3 132,532 - -0.8 132,532 - -0.3 132,532 - +0.2 132,532 - -0.8 132,532 - +1.4 132,532 - +0.6 132,532 - -1.4 132,532 - -1.1 132,532 - -3.2 132,532 - +0.5 132,532 - +4.0 132,532 - -1.0 132,532 - -2.9 132,579 + +1.3 132,579 + +1.1 132,582 - +0.5 132,697 + -3.2 132,705 - -1.0 132,720 + +0.5 132,720 + +0.4 132,720 + -1.6 132,724 - +1.0 132,728 - -3.0 132,728 - +0.6 132,767 - -2.0 132,777 + +1.1 132,784 + -0.5 132,785 - +0.8 132,789 + -1.9 132,805 + -0.1 132,865 - CSW01_00700 0.15 -0.8 132,893 + CSW01_00700 0.21 -1.4 132,893 + CSW01_00700 0.21 -3.1 132,901 - CSW01_00700 0.23 -2.7 132,901 - CSW01_00700 0.23 +1.2 132,901 - CSW01_00700 0.23 -0.8 132,901 - CSW01_00700 0.23 -0.5 132,901 - CSW01_00700 0.23 -1.0 132,901 - CSW01_00700 0.23 -2.9 132,911 - CSW01_00700 0.25 +0.3 132,946 - CSW01_00700 0.33 -1.2 132,963 - CSW01_00700 0.36 -0.2 133,000 + CSW01_00700 0.44 -2.2 133,000 + CSW01_00700 0.44 -2.4 133,000 + CSW01_00700 0.44 -0.5 133,000 + CSW01_00700 0.44 +0.8 133,000 + CSW01_00700 0.44 -0.1 133,000 + CSW01_00700 0.44 +0.0 133,008 - CSW01_00700 0.46 -1.9 133,008 - CSW01_00700 0.46 -0.9 133,008 - CSW01_00700 0.46 -0.4 133,008 - CSW01_00700 0.46 -1.1 133,008 - CSW01_00700 0.46 -3.0 133,008 - CSW01_00700 0.46 +1.9 133,008 - CSW01_00700 0.46 -2.9 133,008 - CSW01_00700 0.46 -0.4 133,008 - CSW01_00700 0.46 -1.4 133,008 - CSW01_00700 0.46 -3.1 133,013 + CSW01_00700 0.47 -1.8 133,013 + CSW01_00700 0.47 +0.8 133,021 - CSW01_00700 0.49 -0.5 133,021 - CSW01_00700 0.49 +0.2 133,021 - CSW01_00700 0.49 -0.8 133,021 - CSW01_00700 0.49 +0.2 133,021 - CSW01_00700 0.49 +2.0 133,021 - CSW01_00700 0.49 -0.2 133,021 - CSW01_00700 0.49 -3.4 133,090 + CSW01_00700 0.63 +0.7 133,090 + CSW01_00700 0.63 +0.2 133,098 - CSW01_00700 0.65 +0.2 133,215 - CSW01_00700 0.90 +0.7 133,270 - +0.5 133,308 + -4.7 133,361 + +0.8 133,430 + -1.0 133,438 + +0.2 133,446 - -2.7 133,484 + CSW01_00705 0.16 +1.2 133,501 - CSW01_00705 0.21 -0.7 133,510 + CSW01_00705 0.24 -1.3 133,527 + CSW01_00705 0.29 -0.0 133,563 - CSW01_00705 0.40 -1.5 133,594 + CSW01_00705 0.49 +0.9 133,608 + CSW01_00705 0.53 -0.5
Or see this region's nucleotide sequence