Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00645

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00635 and CSW01_00640 are separated by 11 nucleotidesCSW01_00640 and CSW01_00645 are separated by 13 nucleotidesCSW01_00645 and CSW01_00650 overlap by 32 nucleotidesCSW01_00650 and CSW01_00655 are separated by 2 nucleotides CSW01_00635: CSW01_00635 - diaminopimelate decarboxylase, at 119,230 to 120,483 _00635 CSW01_00640: CSW01_00640 - diaminopimelate epimerase, at 120,495 to 121,325 _00640 CSW01_00645: CSW01_00645 - DUF484 domain-containing protein, at 121,339 to 122,037 _00645 CSW01_00650: CSW01_00650 - tyrosine recombinase XerC, at 122,006 to 122,941 _00650 CSW01_00655: CSW01_00655 - 2-haloalkanoic acid dehalogenase, at 122,944 to 123,663 _00655 Position (kb) 121 122 123Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 120.340 kb on + strand, within CSW01_00635at 120.340 kb on - strand, within CSW01_00635at 120.340 kb on - strand, within CSW01_00635at 120.340 kb on - strand, within CSW01_00635at 120.340 kb on - strand, within CSW01_00635at 120.394 kb on + strandat 120.395 kb on - strandat 120.431 kb on + strandat 120.434 kb on + strandat 120.441 kb on + strandat 121.316 kb on - strandat 121.377 kb on - strandat 121.377 kb on - strandat 121.429 kb on - strand, within CSW01_00645at 121.429 kb on - strand, within CSW01_00645at 121.438 kb on + strand, within CSW01_00645at 121.438 kb on + strand, within CSW01_00645at 121.446 kb on - strand, within CSW01_00645at 121.461 kb on - strand, within CSW01_00645at 121.478 kb on + strand, within CSW01_00645at 121.478 kb on + strand, within CSW01_00645at 121.480 kb on + strand, within CSW01_00645at 121.480 kb on + strand, within CSW01_00645at 121.480 kb on + strand, within CSW01_00645at 121.517 kb on - strand, within CSW01_00645at 121.581 kb on + strand, within CSW01_00645at 121.648 kb on + strand, within CSW01_00645at 121.728 kb on + strand, within CSW01_00645at 121.826 kb on - strand, within CSW01_00645at 121.851 kb on + strand, within CSW01_00645at 121.859 kb on - strand, within CSW01_00645at 121.859 kb on - strand, within CSW01_00645at 121.859 kb on - strand, within CSW01_00645at 121.962 kb on + strand, within CSW01_00645at 121.962 kb on + strand, within CSW01_00645at 121.970 kb on - strandat 121.971 kb on - strandat 121.998 kb on - strandat 122.099 kb on - strandat 122.108 kb on - strand, within CSW01_00650at 122.108 kb on - strand, within CSW01_00650at 122.115 kb on + strand, within CSW01_00650at 122.123 kb on - strand, within CSW01_00650at 122.128 kb on + strand, within CSW01_00650at 122.128 kb on + strand, within CSW01_00650at 122.136 kb on + strand, within CSW01_00650at 122.141 kb on + strand, within CSW01_00650at 122.141 kb on + strand, within CSW01_00650at 122.148 kb on + strand, within CSW01_00650at 122.153 kb on + strand, within CSW01_00650at 122.166 kb on - strand, within CSW01_00650at 122.308 kb on + strand, within CSW01_00650at 122.309 kb on + strand, within CSW01_00650at 122.314 kb on + strand, within CSW01_00650at 122.314 kb on + strand, within CSW01_00650at 122.314 kb on + strand, within CSW01_00650at 122.322 kb on - strand, within CSW01_00650at 122.322 kb on - strand, within CSW01_00650at 122.322 kb on - strand, within CSW01_00650at 122.334 kb on + strand, within CSW01_00650at 122.395 kb on + strand, within CSW01_00650at 122.455 kb on + strand, within CSW01_00650at 122.467 kb on + strand, within CSW01_00650at 122.468 kb on + strand, within CSW01_00650at 122.533 kb on - strand, within CSW01_00650at 122.533 kb on - strand, within CSW01_00650at 122.533 kb on - strand, within CSW01_00650at 122.584 kb on + strand, within CSW01_00650at 122.585 kb on + strand, within CSW01_00650at 122.585 kb on + strand, within CSW01_00650at 122.585 kb on + strand, within CSW01_00650at 122.593 kb on - strand, within CSW01_00650at 122.804 kb on - strand, within CSW01_00650at 122.821 kb on - strand, within CSW01_00650at 122.821 kb on - strand, within CSW01_00650at 122.821 kb on - strand, within CSW01_00650at 122.833 kb on + strand, within CSW01_00650at 122.890 kb on + strandat 122.891 kb on + strandat 122.891 kb on + strandat 122.899 kb on - strandat 122.926 kb on + strandat 122.926 kb on + strandat 122.926 kb on + strandat 122.977 kb on + strandat 123.010 kb on - strandat 123.015 kb on + strandat 123.022 kb on - strand, within CSW01_00655

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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120,340 + CSW01_00635 0.89 -2.6
120,340 - CSW01_00635 0.89 +0.7
120,340 - CSW01_00635 0.89 +0.8
120,340 - CSW01_00635 0.89 +0.7
120,340 - CSW01_00635 0.89 -3.0
120,394 + -0.0
120,395 - -3.3
120,431 + -0.4
120,434 + +1.5
120,441 + -3.4
121,316 - -1.2
121,377 - +0.5
121,377 - +0.8
121,429 - CSW01_00645 0.13 +1.2
121,429 - CSW01_00645 0.13 -0.9
121,438 + CSW01_00645 0.14 +1.1
121,438 + CSW01_00645 0.14 +0.9
121,446 - CSW01_00645 0.15 +0.9
121,461 - CSW01_00645 0.17 +0.0
121,478 + CSW01_00645 0.20 +1.1
121,478 + CSW01_00645 0.20 +0.8
121,480 + CSW01_00645 0.20 -2.0
121,480 + CSW01_00645 0.20 -4.8
121,480 + CSW01_00645 0.20 +0.7
121,517 - CSW01_00645 0.25 +0.5
121,581 + CSW01_00645 0.35 -0.4
121,648 + CSW01_00645 0.44 +1.2
121,728 + CSW01_00645 0.56 -4.2
121,826 - CSW01_00645 0.70 +1.6
121,851 + CSW01_00645 0.73 +0.8
121,859 - CSW01_00645 0.74 -1.2
121,859 - CSW01_00645 0.74 -1.8
121,859 - CSW01_00645 0.74 +0.8
121,962 + CSW01_00645 0.89 +1.1
121,962 + CSW01_00645 0.89 +1.0
121,970 - +2.9
121,971 - +0.3
121,998 - -2.8
122,099 - -2.1
122,108 - CSW01_00650 0.11 -1.2
122,108 - CSW01_00650 0.11 -1.0
122,115 + CSW01_00650 0.12 -0.5
122,123 - CSW01_00650 0.12 -4.1
122,128 + CSW01_00650 0.13 +0.8
122,128 + CSW01_00650 0.13 +0.4
122,136 + CSW01_00650 0.14 -4.3
122,141 + CSW01_00650 0.14 +0.9
122,141 + CSW01_00650 0.14 -0.8
122,148 + CSW01_00650 0.15 +0.4
122,153 + CSW01_00650 0.16 +0.3
122,166 - CSW01_00650 0.17 -3.7
122,308 + CSW01_00650 0.32 -1.5
122,309 + CSW01_00650 0.32 -3.8
122,314 + CSW01_00650 0.33 -3.6
122,314 + CSW01_00650 0.33 -2.7
122,314 + CSW01_00650 0.33 -1.6
122,322 - CSW01_00650 0.34 -2.2
122,322 - CSW01_00650 0.34 +0.4
122,322 - CSW01_00650 0.34 -3.0
122,334 + CSW01_00650 0.35 -3.4
122,395 + CSW01_00650 0.42 +0.6
122,455 + CSW01_00650 0.48 -0.8
122,467 + CSW01_00650 0.49 +0.5
122,468 + CSW01_00650 0.49 +1.4
122,533 - CSW01_00650 0.56 -0.2
122,533 - CSW01_00650 0.56 -1.2
122,533 - CSW01_00650 0.56 -4.1
122,584 + CSW01_00650 0.62 -0.8
122,585 + CSW01_00650 0.62 -0.1
122,585 + CSW01_00650 0.62 -3.9
122,585 + CSW01_00650 0.62 -0.0
122,593 - CSW01_00650 0.63 +1.2
122,804 - CSW01_00650 0.85 -3.0
122,821 - CSW01_00650 0.87 -3.9
122,821 - CSW01_00650 0.87 -2.7
122,821 - CSW01_00650 0.87 -2.0
122,833 + CSW01_00650 0.88 -3.7
122,890 + -1.9
122,891 + +0.7
122,891 + -3.4
122,899 - +0.6
122,926 + -3.6
122,926 + +2.6
122,926 + -0.5
122,977 + -0.4
123,010 - -0.6
123,015 + -1.8
123,022 - CSW01_00655 0.11 +0.2

Or see this region's nucleotide sequence