Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00205

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00200 and CSW01_00205 are separated by 77 nucleotidesCSW01_00205 and CSW01_00210 are separated by 38 nucleotidesCSW01_00210 and CSW01_00215 overlap by 88 nucleotides CSW01_00200: CSW01_00200 - sporulation control protein Spo0M, at 36,928 to 37,770 _00200 CSW01_00205: CSW01_00205 - hemolysin III family protein, at 37,848 to 38,495 _00205 CSW01_00210: CSW01_00210 - DUF3157 domain-containing protein, at 38,534 to 39,190 _00210 CSW01_00215: CSW01_00215 - potassium uptake protein TrkH, at 39,103 to 40,548 _00215 Position (kb) 37 38 39Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 36.862 kb on - strandat 36.931 kb on + strandat 36.937 kb on + strandat 36.937 kb on + strandat 36.937 kb on + strandat 36.937 kb on + strandat 36.937 kb on + strandat 36.937 kb on + strandat 36.938 kb on + strandat 36.938 kb on + strandat 36.940 kb on - strandat 36.945 kb on - strandat 36.946 kb on - strandat 36.946 kb on - strandat 37.000 kb on - strandat 37.047 kb on - strand, within CSW01_00200at 37.056 kb on + strand, within CSW01_00200at 37.056 kb on + strand, within CSW01_00200at 37.064 kb on - strand, within CSW01_00200at 37.111 kb on - strand, within CSW01_00200at 37.218 kb on + strand, within CSW01_00200at 37.219 kb on + strand, within CSW01_00200at 37.219 kb on + strand, within CSW01_00200at 37.219 kb on + strand, within CSW01_00200at 37.221 kb on - strand, within CSW01_00200at 37.227 kb on - strand, within CSW01_00200at 37.234 kb on - strand, within CSW01_00200at 37.305 kb on + strand, within CSW01_00200at 37.319 kb on - strand, within CSW01_00200at 37.319 kb on - strand, within CSW01_00200at 37.398 kb on + strand, within CSW01_00200at 37.398 kb on - strand, within CSW01_00200at 37.412 kb on + strand, within CSW01_00200at 37.459 kb on + strand, within CSW01_00200at 37.459 kb on + strand, within CSW01_00200at 37.476 kb on + strand, within CSW01_00200at 37.481 kb on + strand, within CSW01_00200at 37.484 kb on - strand, within CSW01_00200at 37.489 kb on - strand, within CSW01_00200at 37.492 kb on + strand, within CSW01_00200at 37.492 kb on + strand, within CSW01_00200at 37.492 kb on + strand, within CSW01_00200at 37.492 kb on + strand, within CSW01_00200at 37.499 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.552 kb on + strand, within CSW01_00200at 37.573 kb on - strand, within CSW01_00200at 37.596 kb on + strand, within CSW01_00200at 37.612 kb on - strand, within CSW01_00200at 37.616 kb on + strand, within CSW01_00200at 37.662 kb on - strand, within CSW01_00200at 37.664 kb on + strand, within CSW01_00200at 37.664 kb on + strand, within CSW01_00200at 37.683 kb on + strand, within CSW01_00200at 37.698 kb on + strandat 37.698 kb on + strandat 37.698 kb on + strandat 37.698 kb on + strandat 37.698 kb on + strandat 37.706 kb on - strandat 37.723 kb on - strandat 37.743 kb on - strandat 37.813 kb on - strandat 37.840 kb on + strandat 37.850 kb on - strandat 37.872 kb on - strandat 37.906 kb on + strandat 37.919 kb on - strand, within CSW01_00205at 37.933 kb on + strand, within CSW01_00205at 37.941 kb on - strand, within CSW01_00205at 37.949 kb on + strand, within CSW01_00205at 38.035 kb on + strand, within CSW01_00205at 38.035 kb on + strand, within CSW01_00205at 38.043 kb on - strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.059 kb on - strand, within CSW01_00205at 38.064 kb on - strand, within CSW01_00205at 38.096 kb on + strand, within CSW01_00205at 38.097 kb on - strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.163 kb on + strand, within CSW01_00205at 38.171 kb on - strand, within CSW01_00205at 38.183 kb on - strand, within CSW01_00205at 38.183 kb on - strand, within CSW01_00205at 38.184 kb on + strand, within CSW01_00205at 38.187 kb on + strand, within CSW01_00205at 38.192 kb on - strand, within CSW01_00205at 38.205 kb on - strand, within CSW01_00205at 38.215 kb on - strand, within CSW01_00205at 38.328 kb on - strand, within CSW01_00205at 38.335 kb on + strand, within CSW01_00205at 38.358 kb on + strand, within CSW01_00205at 38.358 kb on + strand, within CSW01_00205at 38.431 kb on + strandat 38.431 kb on + strandat 38.439 kb on - strandat 38.439 kb on - strandat 38.441 kb on + strandat 38.587 kb on - strandat 38.593 kb on + strandat 38.593 kb on + strandat 38.594 kb on + strandat 38.594 kb on + strandat 38.601 kb on - strand, within CSW01_00210at 38.602 kb on - strand, within CSW01_00210at 38.617 kb on + strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.642 kb on + strand, within CSW01_00210at 38.694 kb on - strand, within CSW01_00210at 38.772 kb on + strand, within CSW01_00210at 38.775 kb on - strand, within CSW01_00210at 38.775 kb on - strand, within CSW01_00210at 38.777 kb on + strand, within CSW01_00210at 38.791 kb on + strand, within CSW01_00210at 38.888 kb on + strand, within CSW01_00210at 38.896 kb on - strand, within CSW01_00210at 38.909 kb on + strand, within CSW01_00210at 38.917 kb on - strand, within CSW01_00210at 38.917 kb on - strand, within CSW01_00210at 38.955 kb on + strand, within CSW01_00210at 39.009 kb on - strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.108 kb on - strandat 39.207 kb on - strandat 39.236 kb on + strandat 39.246 kb on + strandat 39.257 kb on + strand, within CSW01_00215at 39.265 kb on - strand, within CSW01_00215at 39.328 kb on + strand, within CSW01_00215at 39.347 kb on - strand, within CSW01_00215at 39.445 kb on - strand, within CSW01_00215at 39.446 kb on + strand, within CSW01_00215

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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36,862 - -3.7
36,931 + -0.8
36,937 + -0.0
36,937 + -3.2
36,937 + +1.8
36,937 + -0.4
36,937 + -1.6
36,937 + +1.1
36,938 + -4.9
36,938 + -0.6
36,940 - +0.4
36,945 - +0.6
36,946 - +1.0
36,946 - -2.9
37,000 - -3.2
37,047 - CSW01_00200 0.14 +0.5
37,056 + CSW01_00200 0.15 -0.5
37,056 + CSW01_00200 0.15 -2.4
37,064 - CSW01_00200 0.16 -1.8
37,111 - CSW01_00200 0.22 -0.6
37,218 + CSW01_00200 0.34 +0.4
37,219 + CSW01_00200 0.35 +0.7
37,219 + CSW01_00200 0.35 -1.7
37,219 + CSW01_00200 0.35 -0.1
37,221 - CSW01_00200 0.35 +0.4
37,227 - CSW01_00200 0.35 +0.5
37,234 - CSW01_00200 0.36 -0.8
37,305 + CSW01_00200 0.45 +0.1
37,319 - CSW01_00200 0.46 -0.0
37,319 - CSW01_00200 0.46 -2.9
37,398 + CSW01_00200 0.56 -1.6
37,398 - CSW01_00200 0.56 -1.4
37,412 + CSW01_00200 0.57 +1.8
37,459 + CSW01_00200 0.63 -0.4
37,459 + CSW01_00200 0.63 +0.8
37,476 + CSW01_00200 0.65 -2.0
37,481 + CSW01_00200 0.66 -0.9
37,484 - CSW01_00200 0.66 +0.3
37,489 - CSW01_00200 0.67 +0.4
37,492 + CSW01_00200 0.67 +0.1
37,492 + CSW01_00200 0.67 -1.0
37,492 + CSW01_00200 0.67 +0.1
37,492 + CSW01_00200 0.67 +0.8
37,499 - CSW01_00200 0.68 -0.1
37,500 - CSW01_00200 0.68 -2.7
37,500 - CSW01_00200 0.68 -2.0
37,500 - CSW01_00200 0.68 -2.6
37,500 - CSW01_00200 0.68 -3.1
37,500 - CSW01_00200 0.68 +3.4
37,500 - CSW01_00200 0.68 +0.5
37,500 - CSW01_00200 0.68 +0.8
37,500 - CSW01_00200 0.68 -1.4
37,552 + CSW01_00200 0.74 -2.2
37,573 - CSW01_00200 0.77 +1.3
37,596 + CSW01_00200 0.79 +0.7
37,612 - CSW01_00200 0.81 -2.2
37,616 + CSW01_00200 0.82 +0.1
37,662 - CSW01_00200 0.87 +0.9
37,664 + CSW01_00200 0.87 -0.2
37,664 + CSW01_00200 0.87 +2.2
37,683 + CSW01_00200 0.90 +1.6
37,698 + -3.9
37,698 + -2.8
37,698 + +2.2
37,698 + -0.1
37,698 + -1.6
37,706 - -2.8
37,723 - -0.5
37,743 - +2.2
37,813 - +0.8
37,840 + -1.9
37,850 - +0.4
37,872 - -1.0
37,906 + +1.0
37,919 - CSW01_00205 0.11 -4.5
37,933 + CSW01_00205 0.13 +1.9
37,941 - CSW01_00205 0.14 -2.2
37,949 + CSW01_00205 0.16 -2.9
38,035 + CSW01_00205 0.29 -3.3
38,035 + CSW01_00205 0.29 +0.7
38,043 - CSW01_00205 0.30 -0.0
38,045 + CSW01_00205 0.30 +1.7
38,045 + CSW01_00205 0.30 +2.4
38,045 + CSW01_00205 0.30 +1.3
38,045 + CSW01_00205 0.30 +0.6
38,045 + CSW01_00205 0.30 +0.1
38,045 + CSW01_00205 0.30 +1.4
38,045 + CSW01_00205 0.30 -1.3
38,045 + CSW01_00205 0.30 +1.9
38,045 + CSW01_00205 0.30 -0.0
38,045 + CSW01_00205 0.30 -0.1
38,053 - CSW01_00205 0.32 -1.1
38,053 - CSW01_00205 0.32 -3.8
38,053 - CSW01_00205 0.32 -3.6
38,053 - CSW01_00205 0.32 +1.1
38,053 - CSW01_00205 0.32 -0.8
38,053 - CSW01_00205 0.32 +1.7
38,053 - CSW01_00205 0.32 +0.1
38,053 - CSW01_00205 0.32 +0.3
38,053 - CSW01_00205 0.32 +1.0
38,053 - CSW01_00205 0.32 +1.7
38,053 - CSW01_00205 0.32 +0.7
38,053 - CSW01_00205 0.32 -0.3
38,053 - CSW01_00205 0.32 -1.1
38,059 - CSW01_00205 0.33 -2.7
38,064 - CSW01_00205 0.33 +0.2
38,096 + CSW01_00205 0.38 -4.2
38,097 - CSW01_00205 0.38 +1.4
38,128 + CSW01_00205 0.43 +0.4
38,128 + CSW01_00205 0.43 -0.5
38,128 + CSW01_00205 0.43 +0.5
38,128 + CSW01_00205 0.43 +1.1
38,128 + CSW01_00205 0.43 +0.5
38,136 - CSW01_00205 0.44 +1.2
38,136 - CSW01_00205 0.44 -2.7
38,136 - CSW01_00205 0.44 -0.8
38,136 - CSW01_00205 0.44 -0.3
38,136 - CSW01_00205 0.44 +0.4
38,163 + CSW01_00205 0.49 -0.1
38,171 - CSW01_00205 0.50 -0.5
38,183 - CSW01_00205 0.52 -1.3
38,183 - CSW01_00205 0.52 -2.1
38,184 + CSW01_00205 0.52 -4.1
38,187 + CSW01_00205 0.52 -0.6
38,192 - CSW01_00205 0.53 -0.4
38,205 - CSW01_00205 0.55 +2.9
38,215 - CSW01_00205 0.57 -0.2
38,328 - CSW01_00205 0.74 -3.2
38,335 + CSW01_00205 0.75 -0.1
38,358 + CSW01_00205 0.79 +1.9
38,358 + CSW01_00205 0.79 +1.2
38,431 + -1.0
38,431 + -2.4
38,439 - +2.6
38,439 - -2.8
38,441 + +1.8
38,587 - +0.5
38,593 + -0.0
38,593 + +0.6
38,594 + -1.8
38,594 + -2.1
38,601 - CSW01_00210 0.10 -1.4
38,602 - CSW01_00210 0.10 -0.5
38,617 + CSW01_00210 0.13 +1.8
38,625 - CSW01_00210 0.14 +0.3
38,625 - CSW01_00210 0.14 -0.9
38,625 - CSW01_00210 0.14 -1.2
38,625 - CSW01_00210 0.14 -1.6
38,625 - CSW01_00210 0.14 +0.5
38,642 + CSW01_00210 0.16 -0.7
38,694 - CSW01_00210 0.24 -1.1
38,772 + CSW01_00210 0.36 +1.6
38,775 - CSW01_00210 0.37 -2.5
38,775 - CSW01_00210 0.37 -2.0
38,777 + CSW01_00210 0.37 -1.2
38,791 + CSW01_00210 0.39 +0.5
38,888 + CSW01_00210 0.54 -1.8
38,896 - CSW01_00210 0.55 -3.1
38,909 + CSW01_00210 0.57 +0.9
38,917 - CSW01_00210 0.58 -3.5
38,917 - CSW01_00210 0.58 +0.3
38,955 + CSW01_00210 0.64 +0.7
39,009 - CSW01_00210 0.72 -0.8
39,018 + CSW01_00210 0.74 -1.0
39,018 + CSW01_00210 0.74 +1.0
39,018 + CSW01_00210 0.74 +0.3
39,018 + CSW01_00210 0.74 +0.1
39,018 + CSW01_00210 0.74 -0.8
39,018 + CSW01_00210 0.74 -2.4
39,026 - CSW01_00210 0.75 +0.2
39,026 - CSW01_00210 0.75 -1.4
39,026 - CSW01_00210 0.75 +1.5
39,026 - CSW01_00210 0.75 +3.6
39,026 - CSW01_00210 0.75 -2.5
39,108 - -0.3
39,207 - -2.2
39,236 + -0.6
39,246 + +4.5
39,257 + CSW01_00215 0.11 +1.6
39,265 - CSW01_00215 0.11 +0.8
39,328 + CSW01_00215 0.16 -2.8
39,347 - CSW01_00215 0.17 +0.1
39,445 - CSW01_00215 0.24 +1.3
39,446 + CSW01_00215 0.24 +1.3

Or see this region's nucleotide sequence