Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00035

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00020 and CSW01_00025 are separated by 2 nucleotidesCSW01_00025 and CSW01_00030 overlap by 34 nucleotidesCSW01_00030 and CSW01_00035 are separated by 12 nucleotidesCSW01_00035 and CSW01_00040 are separated by 241 nucleotidesCSW01_00040 and CSW01_00045 overlap by 4 nucleotides CSW01_00020: CSW01_00020 - membrane protein insertase YidC, at 2,271 to 3,896 _00020 CSW01_00025: CSW01_00025 - membrane protein insertion efficiency factor YidD, at 3,899 to 4,156 _00025 CSW01_00030: CSW01_00030 - ribonuclease P protein component, at 4,123 to 4,479 _00030 CSW01_00035: CSW01_00035 - 50S ribosomal protein L34, at 4,492 to 4,629 _00035 CSW01_00040: CSW01_00040 - amino acid ABC transporter ATP-binding protein, at 4,871 to 5,608 _00040 CSW01_00045: CSW01_00045 - amino acid ABC transporter permease, at 5,605 to 6,276 _00045 Position (kb) 4 5Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4.097 kb on + strand, within CSW01_00025at 4.123 kb on - strandat 4.761 kb on - strandat 4.768 kb on + strandat 4.778 kb on + strandat 4.869 kb on + strandat 4.937 kb on - strandat 4.947 kb on - strand, within CSW01_00040at 4.949 kb on - strand, within CSW01_00040at 4.955 kb on - strand, within CSW01_00040at 5.036 kb on + strand, within CSW01_00040at 5.069 kb on + strand, within CSW01_00040at 5.077 kb on - strand, within CSW01_00040at 5.077 kb on - strand, within CSW01_00040at 5.079 kb on + strand, within CSW01_00040at 5.092 kb on - strand, within CSW01_00040at 5.168 kb on - strand, within CSW01_00040at 5.169 kb on - strand, within CSW01_00040at 5.181 kb on + strand, within CSW01_00040at 5.204 kb on + strand, within CSW01_00040at 5.204 kb on + strand, within CSW01_00040at 5.212 kb on - strand, within CSW01_00040at 5.212 kb on - strand, within CSW01_00040at 5.212 kb on - strand, within CSW01_00040at 5.212 kb on - strand, within CSW01_00040at 5.224 kb on + strand, within CSW01_00040at 5.258 kb on - strand, within CSW01_00040at 5.291 kb on + strand, within CSW01_00040at 5.309 kb on + strand, within CSW01_00040at 5.345 kb on + strand, within CSW01_00040at 5.386 kb on + strand, within CSW01_00040at 5.441 kb on + strand, within CSW01_00040at 5.449 kb on - strand, within CSW01_00040at 5.463 kb on - strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.479 kb on + strand, within CSW01_00040at 5.479 kb on + strand, within CSW01_00040at 5.482 kb on - strand, within CSW01_00040at 5.485 kb on - strand, within CSW01_00040at 5.486 kb on + strand, within CSW01_00040at 5.492 kb on + strand, within CSW01_00040at 5.571 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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4,097 + CSW01_00025 0.77 -0.9
4,123 - -2.4
4,761 - +1.1
4,768 + -2.8
4,778 + -3.0
4,869 + -4.0
4,937 - +1.0
4,947 - CSW01_00040 0.10 +0.9
4,949 - CSW01_00040 0.11 +0.2
4,955 - CSW01_00040 0.11 +0.3
5,036 + CSW01_00040 0.22 -4.0
5,069 + CSW01_00040 0.27 +0.3
5,077 - CSW01_00040 0.28 -2.1
5,077 - CSW01_00040 0.28 +0.8
5,079 + CSW01_00040 0.28 -3.6
5,092 - CSW01_00040 0.30 +0.5
5,168 - CSW01_00040 0.40 +1.7
5,169 - CSW01_00040 0.40 -3.7
5,181 + CSW01_00040 0.42 -2.8
5,204 + CSW01_00040 0.45 +0.7
5,204 + CSW01_00040 0.45 +0.5
5,212 - CSW01_00040 0.46 -0.3
5,212 - CSW01_00040 0.46 -0.4
5,212 - CSW01_00040 0.46 -0.3
5,212 - CSW01_00040 0.46 +1.4
5,224 + CSW01_00040 0.48 -3.0
5,258 - CSW01_00040 0.52 -1.7
5,291 + CSW01_00040 0.57 +0.0
5,309 + CSW01_00040 0.59 -3.2
5,345 + CSW01_00040 0.64 -0.0
5,386 + CSW01_00040 0.70 +0.2
5,441 + CSW01_00040 0.77 -2.4
5,449 - CSW01_00040 0.78 -0.4
5,463 - CSW01_00040 0.80 -0.3
5,474 + CSW01_00040 0.82 +1.2
5,474 + CSW01_00040 0.82 -1.4
5,474 + CSW01_00040 0.82 -0.9
5,474 + CSW01_00040 0.82 -0.2
5,474 + CSW01_00040 0.82 +0.1
5,474 + CSW01_00040 0.82 +0.9
5,479 + CSW01_00040 0.82 -2.3
5,479 + CSW01_00040 0.82 +1.5
5,482 - CSW01_00040 0.83 -2.6
5,485 - CSW01_00040 0.83 -0.4
5,486 + CSW01_00040 0.83 +0.2
5,492 + CSW01_00040 0.84 +0.8
5,571 + -0.1

Or see this region's nucleotide sequence