Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27715

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27705 and AO353_27710 overlap by 4 nucleotidesAO353_27710 and AO353_27715 are separated by 137 nucleotidesAO353_27715 and AO353_27720 are separated by 85 nucleotides AO353_27705: AO353_27705 - tRNA 2-thiouridylase, at 6,039,557 to 6,040,690 _27705 AO353_27710: AO353_27710 - DNA repair protein, at 6,040,687 to 6,041,310 _27710 AO353_27715: AO353_27715 - adenylosuccinate lyase, at 6,041,448 to 6,042,818 _27715 AO353_27720: AO353_27720 - cupin, at 6,042,904 to 6,044,070 _27720 Position (kb) 6041 6042 6043Strain fitness (log2 ratio) -2 -1 0 1at 6040.757 kb on + strand, within AO353_27710at 6040.758 kb on - strand, within AO353_27710at 6040.861 kb on - strand, within AO353_27710at 6041.092 kb on + strand, within AO353_27710at 6041.343 kb on + strandat 6041.344 kb on - strandat 6041.344 kb on - strandat 6041.344 kb on - strandat 6043.315 kb on + strand, within AO353_27720at 6043.315 kb on + strand, within AO353_27720at 6043.315 kb on + strand, within AO353_27720at 6043.315 kb on + strand, within AO353_27720at 6043.315 kb on + strand, within AO353_27720at 6043.316 kb on - strand, within AO353_27720at 6043.471 kb on + strand, within AO353_27720at 6043.471 kb on + strand, within AO353_27720at 6043.471 kb on + strand, within AO353_27720at 6043.472 kb on - strand, within AO353_27720at 6043.472 kb on - strand, within AO353_27720at 6043.615 kb on + strand, within AO353_27720at 6043.615 kb on + strand, within AO353_27720at 6043.762 kb on + strand, within AO353_27720

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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6,040,757 + AO353_27710 0.11 +0.2
6,040,758 - AO353_27710 0.11 +0.6
6,040,861 - AO353_27710 0.28 +0.4
6,041,092 + AO353_27710 0.65 +0.6
6,041,343 + -2.0
6,041,344 - -1.4
6,041,344 - +0.0
6,041,344 - +0.2
6,043,315 + AO353_27720 0.35 -0.2
6,043,315 + AO353_27720 0.35 -1.7
6,043,315 + AO353_27720 0.35 -2.6
6,043,315 + AO353_27720 0.35 -1.1
6,043,315 + AO353_27720 0.35 +0.6
6,043,316 - AO353_27720 0.35 -2.2
6,043,471 + AO353_27720 0.49 -0.4
6,043,471 + AO353_27720 0.49 -1.4
6,043,471 + AO353_27720 0.49 -1.0
6,043,472 - AO353_27720 0.49 -1.2
6,043,472 - AO353_27720 0.49 -1.8
6,043,615 + AO353_27720 0.61 -2.4
6,043,615 + AO353_27720 0.61 -1.2
6,043,762 + AO353_27720 0.74 -1.6

Or see this region's nucleotide sequence