Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16470

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16465 and AO353_16470 are separated by 209 nucleotidesAO353_16470 and AO353_16475 overlap by 4 nucleotidesAO353_16475 and AO353_16480 are separated by 17 nucleotides AO353_16465: AO353_16465 - elongation factor Ts, at 3,656,707 to 3,657,570 _16465 AO353_16470: AO353_16470 - uridylate kinase, at 3,657,780 to 3,658,523 _16470 AO353_16475: AO353_16475 - ribosome-recycling factor, at 3,658,520 to 3,659,077 _16475 AO353_16480: AO353_16480 - farnesyl-diphosphate synthase, at 3,659,095 to 3,659,850 _16480 Position (kb) 3657 3658 3659Strain fitness (log2 ratio) -2 -1 0 1 2at 3657.568 kb on + strandat 3657.568 kb on + strandat 3657.568 kb on + strandat 3657.568 kb on + strandat 3657.581 kb on + strandat 3657.581 kb on + strandat 3657.581 kb on + strandat 3657.647 kb on + strandat 3657.647 kb on + strandat 3657.647 kb on + strandat 3657.673 kb on + strandat 3657.673 kb on + strandat 3657.713 kb on + strandat 3657.713 kb on + strandat 3657.718 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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3,657,568 + -1.8
3,657,568 + -0.3
3,657,568 + +0.5
3,657,568 + -0.7
3,657,581 + -0.4
3,657,581 + +0.9
3,657,581 + -0.9
3,657,647 + -1.6
3,657,647 + -0.1
3,657,647 + -0.4
3,657,673 + +0.9
3,657,673 + -0.7
3,657,713 + +0.0
3,657,713 + +0.9
3,657,718 + +1.3
3,659,073 + +0.6
3,659,073 + +0.9
3,659,073 + +1.0
3,659,073 + +0.1
3,659,073 + +0.2
3,659,073 + +0.5
3,659,073 + +0.1
3,659,073 + -0.4
3,659,073 + -1.0
3,659,073 + -0.1
3,659,073 + +0.5
3,659,073 + +0.3
3,659,073 + +2.0
3,659,075 + +1.0

Or see this region's nucleotide sequence