Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15870

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15855 and AO353_15860 are separated by 3 nucleotidesAO353_15860 and AO353_15865 are separated by 14 nucleotidesAO353_15865 and AO353_15870 are separated by 90 nucleotidesAO353_15870 and AO353_15875 are separated by 28 nucleotides AO353_15855: AO353_15855 - chaperone protein HscA, at 3,499,962 to 3,501,824 _15855 AO353_15860: AO353_15860 - 2Fe-2S ferredoxin, at 3,501,828 to 3,502,169 _15860 AO353_15865: AO353_15865 - Fe-S assembly protein IscX, at 3,502,184 to 3,502,384 _15865 AO353_15870: AO353_15870 - nucleoside diphosphate kinase, at 3,502,475 to 3,502,900 _15870 AO353_15875: AO353_15875 - 23S rRNA (adenine(2503)-C2)-methyltransferase, at 3,502,929 to 3,504,077 _15875 Position (kb) 3502 3503Strain fitness (log2 ratio) -2 -1 0 1 2at 3502.192 kb on + strandat 3502.192 kb on + strandat 3502.193 kb on - strandat 3502.193 kb on - strandat 3502.193 kb on - strandat 3502.193 kb on - strandat 3502.193 kb on - strandat 3502.193 kb on - strandat 3502.193 kb on - strandat 3502.193 kb on - strandat 3502.193 kb on - strandat 3502.193 kb on - strandat 3502.193 kb on - strandat 3502.193 kb on - strandat 3502.259 kb on + strand, within AO353_15865at 3502.393 kb on + strandat 3502.393 kb on + strandat 3502.393 kb on + strandat 3502.393 kb on + strandat 3502.393 kb on + strandat 3502.393 kb on + strandat 3502.424 kb on + strandat 3502.426 kb on + strandat 3502.426 kb on + strandat 3502.879 kb on + strandat 3502.910 kb on + strandat 3502.910 kb on + strandat 3502.910 kb on + strandat 3502.910 kb on + strandat 3503.117 kb on + strand, within AO353_15875at 3503.223 kb on + strand, within AO353_15875at 3503.223 kb on + strand, within AO353_15875at 3503.223 kb on + strand, within AO353_15875at 3503.369 kb on + strand, within AO353_15875at 3503.369 kb on + strand, within AO353_15875at 3503.655 kb on + strand, within AO353_15875at 3503.655 kb on + strand, within AO353_15875at 3503.655 kb on + strand, within AO353_15875at 3503.691 kb on + strand, within AO353_15875at 3503.691 kb on + strand, within AO353_15875at 3503.691 kb on + strand, within AO353_15875at 3503.733 kb on + strand, within AO353_15875at 3503.733 kb on + strand, within AO353_15875at 3503.733 kb on + strand, within AO353_15875

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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3,502,192 + -0.8
3,502,192 + +0.3
3,502,193 - -0.2
3,502,193 - -0.4
3,502,193 - -2.1
3,502,193 - +0.7
3,502,193 - +0.2
3,502,193 - +0.3
3,502,193 - -0.7
3,502,193 - -1.1
3,502,193 - -1.9
3,502,193 - -0.7
3,502,193 - +1.5
3,502,193 - -0.3
3,502,259 + AO353_15865 0.37 -0.8
3,502,393 + +0.9
3,502,393 + -0.3
3,502,393 + -0.1
3,502,393 + +1.3
3,502,393 + -1.3
3,502,393 + -0.2
3,502,424 + -0.4
3,502,426 + +0.7
3,502,426 + -1.3
3,502,879 + -1.1
3,502,910 + +0.7
3,502,910 + -0.9
3,502,910 + +0.3
3,502,910 + +0.3
3,503,117 + AO353_15875 0.16 -1.7
3,503,223 + AO353_15875 0.26 -0.1
3,503,223 + AO353_15875 0.26 -1.0
3,503,223 + AO353_15875 0.26 -0.2
3,503,369 + AO353_15875 0.38 +0.6
3,503,369 + AO353_15875 0.38 +1.9
3,503,655 + AO353_15875 0.63 -1.3
3,503,655 + AO353_15875 0.63 +0.9
3,503,655 + AO353_15875 0.63 +1.5
3,503,691 + AO353_15875 0.66 -0.8
3,503,691 + AO353_15875 0.66 +1.5
3,503,691 + AO353_15875 0.66 +1.5
3,503,733 + AO353_15875 0.70 -0.2
3,503,733 + AO353_15875 0.70 +0.3
3,503,733 + AO353_15875 0.70 -0.2

Or see this region's nucleotide sequence