Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_15855 and AO353_15860 are separated by 3 nucleotides AO353_15860 and AO353_15865 are separated by 14 nucleotides AO353_15865 and AO353_15870 are separated by 90 nucleotides AO353_15870 and AO353_15875 are separated by 28 nucleotides
AO353_15855: AO353_15855 - chaperone protein HscA, at 3,499,962 to 3,501,824
_15855
AO353_15860: AO353_15860 - 2Fe-2S ferredoxin, at 3,501,828 to 3,502,169
_15860
AO353_15865: AO353_15865 - Fe-S assembly protein IscX, at 3,502,184 to 3,502,384
_15865
AO353_15870: AO353_15870 - nucleoside diphosphate kinase, at 3,502,475 to 3,502,900
_15870
AO353_15875: AO353_15875 - 23S rRNA (adenine(2503)-C2)-methyltransferase, at 3,502,929 to 3,504,077
_15875
Position (kb)
3502
3503 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3502.192 kb on + strand at 3502.192 kb on + strand at 3502.193 kb on - strand at 3502.193 kb on - strand at 3502.193 kb on - strand at 3502.193 kb on - strand at 3502.193 kb on - strand at 3502.193 kb on - strand at 3502.193 kb on - strand at 3502.193 kb on - strand at 3502.193 kb on - strand at 3502.193 kb on - strand at 3502.193 kb on - strand at 3502.193 kb on - strand at 3502.259 kb on + strand, within AO353_15865 at 3502.393 kb on + strand at 3502.393 kb on + strand at 3502.393 kb on + strand at 3502.393 kb on + strand at 3502.393 kb on + strand at 3502.393 kb on + strand at 3502.424 kb on + strand at 3502.426 kb on + strand at 3502.426 kb on + strand at 3502.879 kb on + strand at 3502.910 kb on + strand at 3502.910 kb on + strand at 3502.910 kb on + strand at 3502.910 kb on + strand at 3503.117 kb on + strand, within AO353_15875 at 3503.223 kb on + strand, within AO353_15875 at 3503.223 kb on + strand, within AO353_15875 at 3503.223 kb on + strand, within AO353_15875 at 3503.369 kb on + strand, within AO353_15875 at 3503.369 kb on + strand, within AO353_15875 at 3503.655 kb on + strand, within AO353_15875 at 3503.655 kb on + strand, within AO353_15875 at 3503.655 kb on + strand, within AO353_15875 at 3503.691 kb on + strand, within AO353_15875 at 3503.691 kb on + strand, within AO353_15875 at 3503.691 kb on + strand, within AO353_15875 at 3503.733 kb on + strand, within AO353_15875 at 3503.733 kb on + strand, within AO353_15875 at 3503.733 kb on + strand, within AO353_15875
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 3,502,192 + -0.8 3,502,192 + +0.3 3,502,193 - -0.2 3,502,193 - -0.4 3,502,193 - -2.1 3,502,193 - +0.7 3,502,193 - +0.2 3,502,193 - +0.3 3,502,193 - -0.7 3,502,193 - -1.1 3,502,193 - -1.9 3,502,193 - -0.7 3,502,193 - +1.5 3,502,193 - -0.3 3,502,259 + AO353_15865 0.37 -0.8 3,502,393 + +0.9 3,502,393 + -0.3 3,502,393 + -0.1 3,502,393 + +1.3 3,502,393 + -1.3 3,502,393 + -0.2 3,502,424 + -0.4 3,502,426 + +0.7 3,502,426 + -1.3 3,502,879 + -1.1 3,502,910 + +0.7 3,502,910 + -0.9 3,502,910 + +0.3 3,502,910 + +0.3 3,503,117 + AO353_15875 0.16 -1.7 3,503,223 + AO353_15875 0.26 -0.1 3,503,223 + AO353_15875 0.26 -1.0 3,503,223 + AO353_15875 0.26 -0.2 3,503,369 + AO353_15875 0.38 +0.6 3,503,369 + AO353_15875 0.38 +1.9 3,503,655 + AO353_15875 0.63 -1.3 3,503,655 + AO353_15875 0.63 +0.9 3,503,655 + AO353_15875 0.63 +1.5 3,503,691 + AO353_15875 0.66 -0.8 3,503,691 + AO353_15875 0.66 +1.5 3,503,691 + AO353_15875 0.66 +1.5 3,503,733 + AO353_15875 0.70 -0.2 3,503,733 + AO353_15875 0.70 +0.3 3,503,733 + AO353_15875 0.70 -0.2
Or see this region's nucleotide sequence