Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_13640 and AO353_13645 are separated by 99 nucleotides AO353_13645 and AO353_13650 are separated by 185 nucleotides
AO353_13640: AO353_13640 - histidine kinase, at 3,027,191 to 3,029,968
_13640
AO353_13645: AO353_13645 - phosphoribosylamine--glycine ligase, at 3,030,068 to 3,031,363
_13645
AO353_13650: AO353_13650 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 3,031,549 to 3,033,156
_13650
Position (kb)
3030
3031
3032 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3029.088 kb on + strand, within AO353_13640 at 3029.340 kb on - strand, within AO353_13640 at 3029.410 kb on - strand, within AO353_13640 at 3029.448 kb on + strand, within AO353_13640 at 3029.449 kb on - strand, within AO353_13640 at 3029.505 kb on + strand, within AO353_13640 at 3029.542 kb on - strand at 3029.671 kb on - strand, within AO353_13640 at 3029.817 kb on + strand at 3029.946 kb on - strand at 3029.984 kb on + strand at 3029.985 kb on - strand at 3029.985 kb on - strand at 3029.985 kb on - strand at 3029.985 kb on - strand at 3029.985 kb on - strand at 3029.985 kb on - strand at 3029.985 kb on - strand at 3030.001 kb on - strand at 3030.001 kb on - strand at 3030.001 kb on - strand at 3030.001 kb on - strand at 3030.001 kb on - strand at 3030.001 kb on - strand at 3030.002 kb on + strand at 3030.002 kb on + strand at 3030.002 kb on + strand at 3030.002 kb on + strand at 3030.002 kb on + strand at 3030.002 kb on + strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.003 kb on - strand at 3030.006 kb on + strand at 3030.006 kb on + strand at 3030.007 kb on - strand at 3030.007 kb on - strand at 3030.007 kb on - strand at 3030.007 kb on - strand at 3030.007 kb on - strand at 3030.007 kb on - strand at 3030.007 kb on - strand at 3030.007 kb on - strand at 3030.007 kb on - strand at 3030.007 kb on - strand at 3030.007 kb on - strand at 3030.007 kb on - strand at 3030.023 kb on + strand at 3030.026 kb on + strand at 3030.027 kb on - strand at 3030.040 kb on + strand at 3030.040 kb on + strand at 3030.041 kb on - strand at 3030.064 kb on + strand at 3030.064 kb on + strand at 3030.069 kb on + strand at 3030.069 kb on + strand at 3030.069 kb on + strand at 3030.069 kb on + strand at 3030.069 kb on + strand at 3030.069 kb on + strand at 3030.069 kb on + strand at 3030.069 kb on + strand at 3030.069 kb on + strand at 3030.069 kb on + strand at 3030.070 kb on - strand at 3030.070 kb on - strand at 3030.070 kb on - strand at 3030.070 kb on - strand at 3030.070 kb on - strand at 3030.070 kb on - strand at 3030.070 kb on - strand at 3031.386 kb on - strand at 3031.453 kb on - strand at 3031.453 kb on - strand at 3031.547 kb on - strand at 3031.547 kb on - strand at 3031.547 kb on - strand at 3031.547 kb on - strand at 3032.003 kb on + strand, within AO353_13650
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 3,029,088 + AO353_13640 0.68 +0.4 3,029,340 - AO353_13640 0.77 +0.8 3,029,410 - AO353_13640 0.80 +0.8 3,029,448 + AO353_13640 0.81 +0.8 3,029,449 - AO353_13640 0.81 -1.2 3,029,505 + AO353_13640 0.83 -0.6 3,029,542 - +1.1 3,029,671 - AO353_13640 0.89 +1.1 3,029,817 + +0.1 3,029,946 - -0.1 3,029,984 + -0.5 3,029,985 - +0.5 3,029,985 - +0.3 3,029,985 - -0.4 3,029,985 - -1.0 3,029,985 - +0.5 3,029,985 - +0.3 3,029,985 - +0.3 3,030,001 - +0.7 3,030,001 - +1.1 3,030,001 - -0.9 3,030,001 - -1.2 3,030,001 - +0.5 3,030,001 - -0.8 3,030,002 + -1.5 3,030,002 + -1.5 3,030,002 + +2.1 3,030,002 + -0.9 3,030,002 + -0.9 3,030,002 + -0.2 3,030,003 - -0.1 3,030,003 - -0.3 3,030,003 - -0.5 3,030,003 - -0.3 3,030,003 - +0.0 3,030,003 - +0.5 3,030,003 - +1.4 3,030,003 - +2.4 3,030,003 - +0.4 3,030,003 - -0.9 3,030,003 - +0.3 3,030,003 - -1.4 3,030,003 - +0.1 3,030,003 - -0.1 3,030,003 - +0.3 3,030,003 - -0.6 3,030,003 - +0.8 3,030,003 - -1.0 3,030,006 + -0.5 3,030,006 + -0.2 3,030,007 - -0.5 3,030,007 - +0.3 3,030,007 - -0.5 3,030,007 - -0.6 3,030,007 - -1.2 3,030,007 - +0.7 3,030,007 - -1.2 3,030,007 - +1.1 3,030,007 - -0.9 3,030,007 - -0.5 3,030,007 - +0.9 3,030,007 - +1.1 3,030,023 + -2.4 3,030,026 + -0.5 3,030,027 - +0.4 3,030,040 + -0.0 3,030,040 + +0.8 3,030,041 - +0.3 3,030,064 + +1.6 3,030,064 + -2.4 3,030,069 + -0.4 3,030,069 + +0.7 3,030,069 + -0.9 3,030,069 + +0.2 3,030,069 + +1.1 3,030,069 + +1.1 3,030,069 + +1.1 3,030,069 + -1.9 3,030,069 + -2.2 3,030,069 + +0.7 3,030,070 - +0.2 3,030,070 - +0.1 3,030,070 - -0.9 3,030,070 - +0.8 3,030,070 - +0.8 3,030,070 - -0.7 3,030,070 - +0.8 3,031,386 - -0.4 3,031,453 - +1.0 3,031,453 - +0.5 3,031,547 - +1.1 3,031,547 - -0.0 3,031,547 - +0.9 3,031,547 - +2.6 3,032,003 + AO353_13650 0.28 +1.1
Or see this region's nucleotide sequence