Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13645

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_13640 and AO353_13645 are separated by 99 nucleotidesAO353_13645 and AO353_13650 are separated by 185 nucleotides AO353_13640: AO353_13640 - histidine kinase, at 3,027,191 to 3,029,968 _13640 AO353_13645: AO353_13645 - phosphoribosylamine--glycine ligase, at 3,030,068 to 3,031,363 _13645 AO353_13650: AO353_13650 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 3,031,549 to 3,033,156 _13650 Position (kb) 3030 3031 3032Strain fitness (log2 ratio) -2 -1 0 1 2at 3029.088 kb on + strand, within AO353_13640at 3029.340 kb on - strand, within AO353_13640at 3029.410 kb on - strand, within AO353_13640at 3029.448 kb on + strand, within AO353_13640at 3029.449 kb on - strand, within AO353_13640at 3029.505 kb on + strand, within AO353_13640at 3029.542 kb on - strandat 3029.671 kb on - strand, within AO353_13640at 3029.817 kb on + strandat 3029.946 kb on - strandat 3029.984 kb on + strandat 3029.985 kb on - strandat 3029.985 kb on - strandat 3029.985 kb on - strandat 3029.985 kb on - strandat 3029.985 kb on - strandat 3029.985 kb on - strandat 3029.985 kb on - strandat 3030.001 kb on - strandat 3030.001 kb on - strandat 3030.001 kb on - strandat 3030.001 kb on - strandat 3030.001 kb on - strandat 3030.001 kb on - strandat 3030.002 kb on + strandat 3030.002 kb on + strandat 3030.002 kb on + strandat 3030.002 kb on + strandat 3030.002 kb on + strandat 3030.002 kb on + strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.003 kb on - strandat 3030.006 kb on + strandat 3030.006 kb on + strandat 3030.007 kb on - strandat 3030.007 kb on - strandat 3030.007 kb on - strandat 3030.007 kb on - strandat 3030.007 kb on - strandat 3030.007 kb on - strandat 3030.007 kb on - strandat 3030.007 kb on - strandat 3030.007 kb on - strandat 3030.007 kb on - strandat 3030.007 kb on - strandat 3030.007 kb on - strandat 3030.023 kb on + strandat 3030.026 kb on + strandat 3030.027 kb on - strandat 3030.040 kb on + strandat 3030.040 kb on + strandat 3030.041 kb on - strandat 3030.064 kb on + strandat 3030.064 kb on + strandat 3030.069 kb on + strandat 3030.069 kb on + strandat 3030.069 kb on + strandat 3030.069 kb on + strandat 3030.069 kb on + strandat 3030.069 kb on + strandat 3030.069 kb on + strandat 3030.069 kb on + strandat 3030.069 kb on + strandat 3030.069 kb on + strandat 3030.070 kb on - strandat 3030.070 kb on - strandat 3030.070 kb on - strandat 3030.070 kb on - strandat 3030.070 kb on - strandat 3030.070 kb on - strandat 3030.070 kb on - strandat 3031.386 kb on - strandat 3031.453 kb on - strandat 3031.453 kb on - strandat 3031.547 kb on - strandat 3031.547 kb on - strandat 3031.547 kb on - strandat 3031.547 kb on - strandat 3032.003 kb on + strand, within AO353_13650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
remove
3,029,088 + AO353_13640 0.68 +0.4
3,029,340 - AO353_13640 0.77 +0.8
3,029,410 - AO353_13640 0.80 +0.8
3,029,448 + AO353_13640 0.81 +0.8
3,029,449 - AO353_13640 0.81 -1.2
3,029,505 + AO353_13640 0.83 -0.6
3,029,542 - +1.1
3,029,671 - AO353_13640 0.89 +1.1
3,029,817 + +0.1
3,029,946 - -0.1
3,029,984 + -0.5
3,029,985 - +0.5
3,029,985 - +0.3
3,029,985 - -0.4
3,029,985 - -1.0
3,029,985 - +0.5
3,029,985 - +0.3
3,029,985 - +0.3
3,030,001 - +0.7
3,030,001 - +1.1
3,030,001 - -0.9
3,030,001 - -1.2
3,030,001 - +0.5
3,030,001 - -0.8
3,030,002 + -1.5
3,030,002 + -1.5
3,030,002 + +2.1
3,030,002 + -0.9
3,030,002 + -0.9
3,030,002 + -0.2
3,030,003 - -0.1
3,030,003 - -0.3
3,030,003 - -0.5
3,030,003 - -0.3
3,030,003 - +0.0
3,030,003 - +0.5
3,030,003 - +1.4
3,030,003 - +2.4
3,030,003 - +0.4
3,030,003 - -0.9
3,030,003 - +0.3
3,030,003 - -1.4
3,030,003 - +0.1
3,030,003 - -0.1
3,030,003 - +0.3
3,030,003 - -0.6
3,030,003 - +0.8
3,030,003 - -1.0
3,030,006 + -0.5
3,030,006 + -0.2
3,030,007 - -0.5
3,030,007 - +0.3
3,030,007 - -0.5
3,030,007 - -0.6
3,030,007 - -1.2
3,030,007 - +0.7
3,030,007 - -1.2
3,030,007 - +1.1
3,030,007 - -0.9
3,030,007 - -0.5
3,030,007 - +0.9
3,030,007 - +1.1
3,030,023 + -2.4
3,030,026 + -0.5
3,030,027 - +0.4
3,030,040 + -0.0
3,030,040 + +0.8
3,030,041 - +0.3
3,030,064 + +1.6
3,030,064 + -2.4
3,030,069 + -0.4
3,030,069 + +0.7
3,030,069 + -0.9
3,030,069 + +0.2
3,030,069 + +1.1
3,030,069 + +1.1
3,030,069 + +1.1
3,030,069 + -1.9
3,030,069 + -2.2
3,030,069 + +0.7
3,030,070 - +0.2
3,030,070 - +0.1
3,030,070 - -0.9
3,030,070 - +0.8
3,030,070 - +0.8
3,030,070 - -0.7
3,030,070 - +0.8
3,031,386 - -0.4
3,031,453 - +1.0
3,031,453 - +0.5
3,031,547 - +1.1
3,031,547 - -0.0
3,031,547 - +0.9
3,031,547 - +2.6
3,032,003 + AO353_13650 0.28 +1.1

Or see this region's nucleotide sequence