Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08135

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08125 and AO353_08130 are separated by 95 nucleotidesAO353_08130 and AO353_08135 are separated by 26 nucleotidesAO353_08135 and AO353_08140 overlap by 4 nucleotides AO353_08125: AO353_08125 - Holliday junction resolvase, at 1,793,565 to 1,794,002 _08125 AO353_08130: AO353_08130 - uracil phosphoribosyltransferase, at 1,794,098 to 1,794,604 _08130 AO353_08135: AO353_08135 - aspartate carbamoyltransferase catalytic subunit, at 1,794,631 to 1,795,635 _08135 AO353_08140: AO353_08140 - dihydroorotase, at 1,795,632 to 1,796,903 _08140 Position (kb) 1794 1795 1796Strain fitness (log2 ratio) -1 0 1at 1794.043 kb on + strandat 1794.043 kb on + strandat 1794.243 kb on + strand, within AO353_08130at 1794.243 kb on + strand, within AO353_08130at 1794.243 kb on + strand, within AO353_08130at 1794.243 kb on + strand, within AO353_08130at 1794.243 kb on + strand, within AO353_08130at 1794.284 kb on + strand, within AO353_08130at 1794.284 kb on + strand, within AO353_08130

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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1,794,043 + +0.2
1,794,043 + -0.9
1,794,243 + AO353_08130 0.29 +0.5
1,794,243 + AO353_08130 0.29 +0.5
1,794,243 + AO353_08130 0.29 +0.1
1,794,243 + AO353_08130 0.29 +0.6
1,794,243 + AO353_08130 0.29 +0.5
1,794,284 + AO353_08130 0.37 -0.6
1,794,284 + AO353_08130 0.37 -0.2

Or see this region's nucleotide sequence