Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06720 and AO353_06725 are separated by 128 nucleotides AO353_06725 and AO353_06730 overlap by 4 nucleotides AO353_06730 and AO353_06735 are separated by 246 nucleotides
AO353_06720: AO353_06720 - NrdR family transcriptional regulator, at 1,495,782 to 1,496,246
_06720
AO353_06725: AO353_06725 - hypothetical protein, at 1,496,375 to 1,496,836
_06725
AO353_06730: AO353_06730 - methyltransferase, at 1,496,833 to 1,497,489
_06730
AO353_06735: AO353_06735 - thioredoxin, at 1,497,736 to 1,498,608
_06735
Position (kb) 1496
1497
1498 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1495.856 kb on - strand, within AO353_06720 at 1495.876 kb on + strand, within AO353_06720 at 1495.877 kb on - strand, within AO353_06720 at 1495.877 kb on - strand, within AO353_06720 at 1495.877 kb on - strand, within AO353_06720 at 1496.308 kb on + strand at 1496.309 kb on - strand at 1496.322 kb on + strand at 1496.322 kb on + strand at 1496.322 kb on + strand at 1496.322 kb on + strand at 1496.322 kb on + strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.333 kb on + strand at 1496.333 kb on + strand at 1496.334 kb on - strand at 1496.334 kb on - strand at 1496.334 kb on - strand at 1496.397 kb on + strand at 1496.397 kb on + strand at 1496.397 kb on + strand at 1496.398 kb on - strand at 1496.398 kb on - strand at 1496.398 kb on - strand at 1496.398 kb on - strand at 1496.398 kb on - strand at 1496.428 kb on + strand, within AO353_06725 at 1496.428 kb on + strand, within AO353_06725 at 1496.428 kb on + strand, within AO353_06725 at 1496.429 kb on - strand, within AO353_06725 at 1496.528 kb on + strand, within AO353_06725 at 1496.864 kb on + strand at 1496.865 kb on - strand at 1497.004 kb on + strand, within AO353_06730 at 1497.004 kb on + strand, within AO353_06730 at 1497.005 kb on - strand, within AO353_06730 at 1497.005 kb on - strand, within AO353_06730 at 1497.005 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.293 kb on - strand, within AO353_06730 at 1497.293 kb on - strand, within AO353_06730 at 1497.391 kb on + strand, within AO353_06730 at 1497.391 kb on + strand, within AO353_06730 at 1497.391 kb on + strand, within AO353_06730 at 1497.391 kb on + strand, within AO353_06730 at 1497.392 kb on - strand, within AO353_06730 at 1497.392 kb on - strand, within AO353_06730 at 1497.469 kb on + strand at 1497.470 kb on - strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.598 kb on - strand at 1497.598 kb on - strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.701 kb on - strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.754 kb on + strand at 1497.754 kb on + strand at 1497.754 kb on + strand at 1497.754 kb on + strand at 1497.755 kb on - strand at 1497.755 kb on - strand at 1497.755 kb on - strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.757 kb on - strand at 1497.757 kb on - strand at 1497.757 kb on - strand at 1497.757 kb on - strand at 1497.771 kb on + strand at 1497.898 kb on + strand, within AO353_06735 at 1497.898 kb on + strand, within AO353_06735 at 1497.898 kb on + strand, within AO353_06735 at 1497.898 kb on + strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1498.073 kb on + strand, within AO353_06735 at 1498.073 kb on + strand, within AO353_06735 at 1498.074 kb on - strand, within AO353_06735 at 1498.074 kb on - strand, within AO353_06735 at 1498.074 kb on - strand, within AO353_06735 at 1498.074 kb on - strand, within AO353_06735 at 1498.188 kb on + strand, within AO353_06735 at 1498.188 kb on + strand, within AO353_06735 at 1498.189 kb on - strand, within AO353_06735 at 1498.189 kb on - strand, within AO353_06735 at 1498.189 kb on - strand, within AO353_06735 at 1498.411 kb on + strand, within AO353_06735 at 1498.412 kb on - strand, within AO353_06735 at 1498.412 kb on - strand, within AO353_06735 at 1498.447 kb on + strand, within AO353_06735 at 1498.447 kb on + strand, within AO353_06735 at 1498.447 kb on + strand, within AO353_06735 at 1498.448 kb on - strand, within AO353_06735 at 1498.448 kb on - strand, within AO353_06735 at 1498.448 kb on - strand, within AO353_06735 at 1498.448 kb on - strand, within AO353_06735
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 1,495,856 - AO353_06720 0.16 +0.1 1,495,876 + AO353_06720 0.20 +0.1 1,495,877 - AO353_06720 0.20 -1.1 1,495,877 - AO353_06720 0.20 -1.5 1,495,877 - AO353_06720 0.20 -1.6 1,496,308 + -0.1 1,496,309 - +1.1 1,496,322 + +2.1 1,496,322 + -0.5 1,496,322 + -2.3 1,496,322 + -0.5 1,496,322 + +1.6 1,496,323 - -0.2 1,496,323 - -0.2 1,496,323 - +0.6 1,496,323 - -0.7 1,496,323 - -0.5 1,496,323 - -0.1 1,496,323 - +1.5 1,496,323 - +0.4 1,496,323 - +0.3 1,496,323 - +1.4 1,496,333 + +0.3 1,496,333 + -2.4 1,496,334 - +0.6 1,496,334 - -0.3 1,496,334 - -0.2 1,496,397 + +0.1 1,496,397 + -1.0 1,496,397 + -1.1 1,496,398 - -0.3 1,496,398 - -0.9 1,496,398 - -0.7 1,496,398 - +0.0 1,496,398 - -0.9 1,496,428 + AO353_06725 0.11 -1.7 1,496,428 + AO353_06725 0.11 +1.1 1,496,428 + AO353_06725 0.11 -1.3 1,496,429 - AO353_06725 0.12 -0.5 1,496,528 + AO353_06725 0.33 +1.6 1,496,864 + +0.3 1,496,865 - +0.1 1,497,004 + AO353_06730 0.26 -0.3 1,497,004 + AO353_06730 0.26 -1.1 1,497,005 - AO353_06730 0.26 -0.1 1,497,005 - AO353_06730 0.26 +0.7 1,497,005 - AO353_06730 0.26 -0.1 1,497,230 - AO353_06730 0.60 -1.5 1,497,230 - AO353_06730 0.60 +0.1 1,497,230 - AO353_06730 0.60 -0.7 1,497,230 - AO353_06730 0.60 +1.5 1,497,292 + AO353_06730 0.70 -1.3 1,497,292 + AO353_06730 0.70 +1.6 1,497,292 + AO353_06730 0.70 +1.6 1,497,292 + AO353_06730 0.70 -1.1 1,497,292 + AO353_06730 0.70 +0.7 1,497,292 + AO353_06730 0.70 -1.9 1,497,293 - AO353_06730 0.70 -1.3 1,497,293 - AO353_06730 0.70 +0.5 1,497,391 + AO353_06730 0.85 +0.9 1,497,391 + AO353_06730 0.85 -0.1 1,497,391 + AO353_06730 0.85 +0.5 1,497,391 + AO353_06730 0.85 -0.7 1,497,392 - AO353_06730 0.85 +0.3 1,497,392 - AO353_06730 0.85 -0.7 1,497,469 + +0.6 1,497,470 - -0.3 1,497,483 + -1.5 1,497,483 + +0.3 1,497,483 + +0.1 1,497,483 + +0.1 1,497,483 + -0.9 1,497,483 + -0.9 1,497,483 + -1.5 1,497,483 + +1.1 1,497,483 + +1.1 1,497,483 + -0.2 1,497,483 + -0.1 1,497,484 - +0.6 1,497,484 - +0.2 1,497,484 - -0.7 1,497,484 - -0.5 1,497,484 - -0.5 1,497,484 - -0.9 1,497,484 - -1.7 1,497,484 - -0.0 1,497,598 - +2.1 1,497,598 - +0.3 1,497,670 + +0.8 1,497,670 + -2.5 1,497,670 + -1.7 1,497,670 + -0.5 1,497,670 + -0.6 1,497,670 + -0.0 1,497,670 + +0.2 1,497,670 + -0.9 1,497,670 + -1.6 1,497,671 - -1.3 1,497,671 - -0.3 1,497,671 - -0.2 1,497,671 - +0.5 1,497,671 - +1.1 1,497,671 - -0.0 1,497,671 - +0.1 1,497,674 + +1.3 1,497,674 + +0.1 1,497,674 + -0.3 1,497,674 + +0.6 1,497,674 + -0.9 1,497,674 + -0.3 1,497,674 + +0.9 1,497,674 + -0.5 1,497,674 + +0.5 1,497,674 + -0.3 1,497,674 + -0.1 1,497,674 + -1.4 1,497,674 + -0.8 1,497,674 + +0.3 1,497,674 + -0.8 1,497,674 + -0.8 1,497,674 + -1.2 1,497,675 - -0.6 1,497,675 - -0.7 1,497,675 - +0.5 1,497,675 - -0.2 1,497,675 - +0.2 1,497,675 - +0.1 1,497,675 - +0.5 1,497,675 - +0.6 1,497,675 - +1.1 1,497,675 - +1.0 1,497,675 - -0.9 1,497,675 - +0.6 1,497,675 - +0.3 1,497,675 - +1.5 1,497,675 - +1.1 1,497,675 - -1.1 1,497,675 - +0.1 1,497,675 - -0.6 1,497,678 + +1.1 1,497,678 + -1.2 1,497,678 + +0.1 1,497,678 + +2.4 1,497,678 + +1.1 1,497,678 + +0.7 1,497,678 + +0.5 1,497,678 + -0.0 1,497,678 + -0.8 1,497,678 + -2.4 1,497,678 + +0.5 1,497,678 + -0.3 1,497,678 + -0.9 1,497,678 + -0.2 1,497,678 + -0.4 1,497,678 + -0.2 1,497,678 + -0.5 1,497,678 + +1.1 1,497,678 + -0.1 1,497,679 - -0.3 1,497,679 - +0.7 1,497,679 - -0.5 1,497,679 - +0.1 1,497,679 - +1.1 1,497,679 - -0.8 1,497,679 - -0.4 1,497,679 - +1.6 1,497,679 - +0.7 1,497,679 - +1.2 1,497,679 - +0.1 1,497,679 - +0.6 1,497,679 - +1.1 1,497,679 - -0.9 1,497,679 - -0.7 1,497,679 - -1.4 1,497,679 - -0.5 1,497,679 - -1.2 1,497,700 + -0.3 1,497,700 + -0.4 1,497,700 + -0.3 1,497,700 + -1.8 1,497,700 + +0.1 1,497,700 + +0.7 1,497,700 + -0.3 1,497,700 + +0.7 1,497,701 - +1.1 1,497,702 + +0.1 1,497,702 + -0.8 1,497,702 + -0.3 1,497,702 + +0.1 1,497,702 + -1.3 1,497,702 + -0.5 1,497,702 + +0.2 1,497,702 + +1.1 1,497,702 + -1.6 1,497,702 + +0.2 1,497,702 + +1.1 1,497,702 + +0.8 1,497,702 + -2.7 1,497,702 + +0.7 1,497,702 + -0.3 1,497,702 + -0.6 1,497,702 + +2.4 1,497,702 + -0.5 1,497,702 + -0.3 1,497,703 - -0.9 1,497,703 - +0.6 1,497,703 - -1.5 1,497,703 - +0.5 1,497,703 - +0.5 1,497,703 - +0.2 1,497,703 - +2.1 1,497,703 - +0.6 1,497,703 - +0.1 1,497,703 - +1.6 1,497,703 - +0.8 1,497,703 - +0.6 1,497,703 - +0.1 1,497,703 - +0.5 1,497,703 - +1.6 1,497,703 - +0.7 1,497,754 + +0.6 1,497,754 + +0.1 1,497,754 + -1.4 1,497,754 + +0.5 1,497,755 - +0.1 1,497,755 - -1.1 1,497,755 - +0.6 1,497,756 + +0.2 1,497,756 + +0.5 1,497,756 + +0.3 1,497,756 + +0.4 1,497,756 + -0.1 1,497,756 + -0.3 1,497,756 + +0.4 1,497,756 + +0.2 1,497,757 - -1.6 1,497,757 - -1.4 1,497,757 - +2.1 1,497,757 - +0.2 1,497,771 + +0.7 1,497,898 + AO353_06735 0.19 -1.5 1,497,898 + AO353_06735 0.19 -0.3 1,497,898 + AO353_06735 0.19 -0.1 1,497,898 + AO353_06735 0.19 -1.1 1,497,899 - AO353_06735 0.19 -0.2 1,497,899 - AO353_06735 0.19 -0.3 1,497,899 - AO353_06735 0.19 -0.3 1,497,899 - AO353_06735 0.19 +0.8 1,497,899 - AO353_06735 0.19 +1.5 1,497,899 - AO353_06735 0.19 -0.4 1,497,899 - AO353_06735 0.19 -0.1 1,497,899 - AO353_06735 0.19 +0.1 1,497,899 - AO353_06735 0.19 +1.4 1,498,073 + AO353_06735 0.39 +0.3 1,498,073 + AO353_06735 0.39 +1.7 1,498,074 - AO353_06735 0.39 -0.5 1,498,074 - AO353_06735 0.39 +0.1 1,498,074 - AO353_06735 0.39 +1.9 1,498,074 - AO353_06735 0.39 -0.2 1,498,188 + AO353_06735 0.52 +1.9 1,498,188 + AO353_06735 0.52 +0.8 1,498,189 - AO353_06735 0.52 +0.3 1,498,189 - AO353_06735 0.52 +0.8 1,498,189 - AO353_06735 0.52 +0.1 1,498,411 + AO353_06735 0.77 +1.3 1,498,412 - AO353_06735 0.77 -0.2 1,498,412 - AO353_06735 0.77 -0.5 1,498,447 + AO353_06735 0.81 -0.3 1,498,447 + AO353_06735 0.81 +0.1 1,498,447 + AO353_06735 0.81 +0.1 1,498,448 - AO353_06735 0.82 +1.1 1,498,448 - AO353_06735 0.82 -0.5 1,498,448 - AO353_06735 0.82 -1.3 1,498,448 - AO353_06735 0.82 +0.5
Or see this region's nucleotide sequence