Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05635

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05630 and AO353_05635 are separated by 139 nucleotidesAO353_05635 and AO353_05640 are separated by 258 nucleotides AO353_05630: AO353_05630 - carbamoyl phosphate synthase large subunit, at 1,241,790 to 1,245,011 _05630 AO353_05635: AO353_05635 - carbamoyl phosphate synthase small subunit, at 1,245,151 to 1,246,287 _05635 AO353_05640: AO353_05640 - 4-hydroxy-tetrahydrodipicolinate reductase, at 1,246,546 to 1,247,352 _05640 Position (kb) 1245 1246 1247Strain fitness (log2 ratio) -2 -1 0 1at 1245.132 kb on - strandat 1245.132 kb on - strandat 1245.132 kb on - strandat 1245.153 kb on - strandat 1246.305 kb on - strandat 1246.351 kb on - strandat 1246.351 kb on - strandat 1246.351 kb on - strandat 1246.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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1,245,132 - -1.0
1,245,132 - -0.3
1,245,132 - +1.7
1,245,153 - -2.7
1,246,305 - +0.6
1,246,351 - +1.4
1,246,351 - +1.1
1,246,351 - +0.1
1,246,418 - +1.7

Or see this region's nucleotide sequence