Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_05615 and AO353_05620 are separated by 9 nucleotides AO353_05620 and AO353_05625 are separated by 28 nucleotides AO353_05625 and AO353_05630 overlap by 4 nucleotides AO353_05630 and AO353_05635 are separated by 139 nucleotides
AO353_05615: AO353_05615 - RNA-binding protein, at 1,240,566 to 1,240,874
_05615
AO353_05620: AO353_05620 - MFS transporter, at 1,240,884 to 1,241,288
_05620
AO353_05625: AO353_05625 - transcription elongation factor GreA, at 1,241,317 to 1,241,793
_05625
AO353_05630: AO353_05630 - carbamoyl phosphate synthase large subunit, at 1,241,790 to 1,245,011
_05630
AO353_05635: AO353_05635 - carbamoyl phosphate synthase small subunit, at 1,245,151 to 1,246,287
_05635
Position (kb)
1241
1242
1243
1244
1245
1246 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1240.819 kb on - strand, within AO353_05615 at 1240.933 kb on - strand, within AO353_05620 at 1240.933 kb on - strand, within AO353_05620 at 1240.933 kb on - strand, within AO353_05620 at 1240.933 kb on - strand, within AO353_05620 at 1240.933 kb on - strand, within AO353_05620 at 1240.970 kb on - strand, within AO353_05620 at 1240.970 kb on - strand, within AO353_05620 at 1240.970 kb on - strand, within AO353_05620 at 1241.024 kb on - strand, within AO353_05620 at 1241.024 kb on - strand, within AO353_05620 at 1241.024 kb on - strand, within AO353_05620 at 1241.024 kb on - strand, within AO353_05620 at 1241.024 kb on - strand, within AO353_05620 at 1241.024 kb on - strand, within AO353_05620 at 1241.039 kb on - strand, within AO353_05620 at 1241.080 kb on - strand, within AO353_05620 at 1241.208 kb on - strand, within AO353_05620 at 1241.208 kb on - strand, within AO353_05620 at 1241.323 kb on - strand at 1241.481 kb on - strand, within AO353_05625 at 1241.652 kb on - strand, within AO353_05625 at 1241.652 kb on - strand, within AO353_05625 at 1241.652 kb on - strand, within AO353_05625 at 1241.811 kb on + strand at 1241.812 kb on - strand at 1241.812 kb on - strand at 1241.812 kb on - strand at 1245.132 kb on - strand at 1245.132 kb on - strand at 1245.132 kb on - strand at 1245.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 1,240,819 - AO353_05615 0.82 -0.6 1,240,933 - AO353_05620 0.12 -2.0 1,240,933 - AO353_05620 0.12 -1.3 1,240,933 - AO353_05620 0.12 +1.3 1,240,933 - AO353_05620 0.12 +0.8 1,240,933 - AO353_05620 0.12 -0.2 1,240,970 - AO353_05620 0.21 -1.8 1,240,970 - AO353_05620 0.21 +0.4 1,240,970 - AO353_05620 0.21 -1.0 1,241,024 - AO353_05620 0.35 +2.0 1,241,024 - AO353_05620 0.35 +0.8 1,241,024 - AO353_05620 0.35 +0.8 1,241,024 - AO353_05620 0.35 +0.6 1,241,024 - AO353_05620 0.35 +1.4 1,241,024 - AO353_05620 0.35 -0.0 1,241,039 - AO353_05620 0.38 -0.6 1,241,080 - AO353_05620 0.48 -0.4 1,241,208 - AO353_05620 0.80 +1.7 1,241,208 - AO353_05620 0.80 +0.3 1,241,323 - +0.1 1,241,481 - AO353_05625 0.34 +0.4 1,241,652 - AO353_05625 0.70 -1.9 1,241,652 - AO353_05625 0.70 -0.2 1,241,652 - AO353_05625 0.70 +0.8 1,241,811 + -0.0 1,241,812 - +1.3 1,241,812 - -1.6 1,241,812 - +1.6 1,245,132 - -1.0 1,245,132 - -0.3 1,245,132 - +1.7 1,245,153 - -2.7
Or see this region's nucleotide sequence