Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05265

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05260 and AO353_05265 are separated by 10 nucleotidesAO353_05265 and AO353_05270 are separated by 226 nucleotidesAO353_05270 and AO353_05275 are separated by 50 nucleotides AO353_05260: AO353_05260 - glutamyl-tRNA amidotransferase, at 1,157,034 to 1,158,485 _05260 AO353_05265: AO353_05265 - glutamyl-tRNA amidotransferase, at 1,158,496 to 1,159,941 _05265 AO353_05270: AO353_05270 - hypothetical protein, at 1,160,168 to 1,160,542 _05270 AO353_05275: AO353_05275 - conjugal transfer protein TraR, at 1,160,593 to 1,161,663 _05275 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1159.964 kb on + strandat 1160.067 kb on - strandat 1160.067 kb on - strandat 1160.067 kb on - strandat 1160.067 kb on - strandat 1160.067 kb on - strandat 1160.067 kb on - strandat 1160.067 kb on - strandat 1160.149 kb on + strandat 1160.149 kb on + strandat 1160.149 kb on + strandat 1160.149 kb on + strandat 1160.149 kb on + strandat 1160.150 kb on - strandat 1160.150 kb on - strandat 1160.178 kb on + strandat 1160.178 kb on + strandat 1160.179 kb on - strandat 1160.179 kb on - strandat 1160.273 kb on + strand, within AO353_05270at 1160.273 kb on + strand, within AO353_05270at 1160.273 kb on + strand, within AO353_05270at 1160.273 kb on + strand, within AO353_05270at 1160.274 kb on - strand, within AO353_05270at 1160.276 kb on + strand, within AO353_05270at 1160.276 kb on + strand, within AO353_05270at 1160.277 kb on - strand, within AO353_05270at 1160.358 kb on + strand, within AO353_05270at 1160.358 kb on + strand, within AO353_05270at 1160.358 kb on + strand, within AO353_05270at 1160.359 kb on - strand, within AO353_05270at 1160.359 kb on - strand, within AO353_05270at 1160.401 kb on + strand, within AO353_05270at 1160.402 kb on - strand, within AO353_05270at 1160.402 kb on - strand, within AO353_05270at 1160.402 kb on - strand, within AO353_05270at 1160.402 kb on - strand, within AO353_05270at 1160.402 kb on - strand, within AO353_05270at 1160.402 kb on - strand, within AO353_05270at 1160.402 kb on - strand, within AO353_05270at 1160.402 kb on - strand, within AO353_05270at 1160.579 kb on + strandat 1160.579 kb on + strandat 1160.579 kb on + strandat 1160.579 kb on + strandat 1160.579 kb on + strandat 1160.580 kb on - strandat 1160.643 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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1,159,964 + -0.6
1,160,067 - -0.0
1,160,067 - +0.3
1,160,067 - -0.5
1,160,067 - -1.6
1,160,067 - +2.1
1,160,067 - -1.8
1,160,067 - -0.6
1,160,149 + -2.8
1,160,149 + -0.4
1,160,149 + +1.5
1,160,149 + +0.3
1,160,149 + -1.8
1,160,150 - +1.3
1,160,150 - +2.0
1,160,178 + -0.0
1,160,178 + +0.4
1,160,179 - +2.1
1,160,179 - -0.7
1,160,273 + AO353_05270 0.28 -1.4
1,160,273 + AO353_05270 0.28 +0.3
1,160,273 + AO353_05270 0.28 -0.0
1,160,273 + AO353_05270 0.28 -1.6
1,160,274 - AO353_05270 0.28 +0.3
1,160,276 + AO353_05270 0.29 +3.0
1,160,276 + AO353_05270 0.29 +0.2
1,160,277 - AO353_05270 0.29 +0.1
1,160,358 + AO353_05270 0.51 -0.0
1,160,358 + AO353_05270 0.51 +0.4
1,160,358 + AO353_05270 0.51 +2.2
1,160,359 - AO353_05270 0.51 -0.0
1,160,359 - AO353_05270 0.51 -0.7
1,160,401 + AO353_05270 0.62 -0.6
1,160,402 - AO353_05270 0.62 -0.6
1,160,402 - AO353_05270 0.62 -0.5
1,160,402 - AO353_05270 0.62 +0.0
1,160,402 - AO353_05270 0.62 +1.7
1,160,402 - AO353_05270 0.62 -1.4
1,160,402 - AO353_05270 0.62 +1.5
1,160,402 - AO353_05270 0.62 +0.5
1,160,402 - AO353_05270 0.62 +0.2
1,160,579 + -0.0
1,160,579 + -1.6
1,160,579 + -2.0
1,160,579 + -0.6
1,160,579 + -0.5
1,160,580 - -2.1
1,160,643 - +1.4

Or see this region's nucleotide sequence