Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_05260 and AO353_05265 are separated by 10 nucleotides AO353_05265 and AO353_05270 are separated by 226 nucleotides AO353_05270 and AO353_05275 are separated by 50 nucleotides
AO353_05260: AO353_05260 - glutamyl-tRNA amidotransferase, at 1,157,034 to 1,158,485
_05260
AO353_05265: AO353_05265 - glutamyl-tRNA amidotransferase, at 1,158,496 to 1,159,941
_05265
AO353_05270: AO353_05270 - hypothetical protein, at 1,160,168 to 1,160,542
_05270
AO353_05275: AO353_05275 - conjugal transfer protein TraR, at 1,160,593 to 1,161,663
_05275
Position (kb)
1158
1159
1160 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1159.964 kb on + strand at 1160.067 kb on - strand at 1160.067 kb on - strand at 1160.067 kb on - strand at 1160.067 kb on - strand at 1160.067 kb on - strand at 1160.067 kb on - strand at 1160.067 kb on - strand at 1160.149 kb on + strand at 1160.149 kb on + strand at 1160.149 kb on + strand at 1160.149 kb on + strand at 1160.149 kb on + strand at 1160.150 kb on - strand at 1160.150 kb on - strand at 1160.178 kb on + strand at 1160.178 kb on + strand at 1160.179 kb on - strand at 1160.179 kb on - strand at 1160.273 kb on + strand, within AO353_05270 at 1160.273 kb on + strand, within AO353_05270 at 1160.273 kb on + strand, within AO353_05270 at 1160.273 kb on + strand, within AO353_05270 at 1160.274 kb on - strand, within AO353_05270 at 1160.276 kb on + strand, within AO353_05270 at 1160.276 kb on + strand, within AO353_05270 at 1160.277 kb on - strand, within AO353_05270 at 1160.358 kb on + strand, within AO353_05270 at 1160.358 kb on + strand, within AO353_05270 at 1160.358 kb on + strand, within AO353_05270 at 1160.359 kb on - strand, within AO353_05270 at 1160.359 kb on - strand, within AO353_05270 at 1160.401 kb on + strand, within AO353_05270 at 1160.402 kb on - strand, within AO353_05270 at 1160.402 kb on - strand, within AO353_05270 at 1160.402 kb on - strand, within AO353_05270 at 1160.402 kb on - strand, within AO353_05270 at 1160.402 kb on - strand, within AO353_05270 at 1160.402 kb on - strand, within AO353_05270 at 1160.402 kb on - strand, within AO353_05270 at 1160.402 kb on - strand, within AO353_05270 at 1160.579 kb on + strand at 1160.579 kb on + strand at 1160.579 kb on + strand at 1160.579 kb on + strand at 1160.579 kb on + strand at 1160.580 kb on - strand at 1160.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 1,159,964 + -0.6 1,160,067 - -0.0 1,160,067 - +0.3 1,160,067 - -0.5 1,160,067 - -1.6 1,160,067 - +2.1 1,160,067 - -1.8 1,160,067 - -0.6 1,160,149 + -2.8 1,160,149 + -0.4 1,160,149 + +1.5 1,160,149 + +0.3 1,160,149 + -1.8 1,160,150 - +1.3 1,160,150 - +2.0 1,160,178 + -0.0 1,160,178 + +0.4 1,160,179 - +2.1 1,160,179 - -0.7 1,160,273 + AO353_05270 0.28 -1.4 1,160,273 + AO353_05270 0.28 +0.3 1,160,273 + AO353_05270 0.28 -0.0 1,160,273 + AO353_05270 0.28 -1.6 1,160,274 - AO353_05270 0.28 +0.3 1,160,276 + AO353_05270 0.29 +3.0 1,160,276 + AO353_05270 0.29 +0.2 1,160,277 - AO353_05270 0.29 +0.1 1,160,358 + AO353_05270 0.51 -0.0 1,160,358 + AO353_05270 0.51 +0.4 1,160,358 + AO353_05270 0.51 +2.2 1,160,359 - AO353_05270 0.51 -0.0 1,160,359 - AO353_05270 0.51 -0.7 1,160,401 + AO353_05270 0.62 -0.6 1,160,402 - AO353_05270 0.62 -0.6 1,160,402 - AO353_05270 0.62 -0.5 1,160,402 - AO353_05270 0.62 +0.0 1,160,402 - AO353_05270 0.62 +1.7 1,160,402 - AO353_05270 0.62 -1.4 1,160,402 - AO353_05270 0.62 +1.5 1,160,402 - AO353_05270 0.62 +0.5 1,160,402 - AO353_05270 0.62 +0.2 1,160,579 + -0.0 1,160,579 + -1.6 1,160,579 + -2.0 1,160,579 + -0.6 1,160,579 + -0.5 1,160,580 - -2.1 1,160,643 - +1.4
Or see this region's nucleotide sequence