Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04480 and AO353_04485 are separated by 5 nucleotides AO353_04485 and AO353_04490 are separated by 286 nucleotides
AO353_04480: AO353_04480 - NGG1p interacting factor NIF3, at 964,439 to 964,750
_04480
AO353_04485: AO353_04485 - phosphoribosylformylglycinamidine synthase, at 964,756 to 968,652
_04485
AO353_04490: AO353_04490 - murein transglycosylase, at 968,939 to 970,399
_04490
Position (kb) 964
965
966
967
968
969 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.859 kb on - strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.868 kb on - strand at 963.868 kb on - strand at 963.897 kb on + strand at 963.897 kb on + strand at 963.898 kb on - strand at 963.898 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.386 kb on + strand at 964.386 kb on + strand at 964.387 kb on - strand at 964.387 kb on - strand at 964.424 kb on + strand at 964.424 kb on + strand at 964.425 kb on - strand at 964.467 kb on + strand at 964.482 kb on + strand at 964.483 kb on - strand, within AO353_04480 at 964.483 kb on - strand, within AO353_04480 at 964.591 kb on + strand, within AO353_04480 at 964.659 kb on + strand, within AO353_04480 at 964.659 kb on + strand, within AO353_04480 at 964.659 kb on + strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.746 kb on + strand at 964.746 kb on + strand at 964.746 kb on + strand at 964.747 kb on - strand at 964.747 kb on - strand at 964.747 kb on - strand at 964.757 kb on + strand at 964.757 kb on + strand at 964.757 kb on + strand at 964.757 kb on + strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 968.734 kb on - strand at 968.811 kb on - strand at 968.877 kb on + strand at 968.877 kb on + strand at 968.877 kb on + strand at 968.894 kb on - strand at 968.927 kb on + strand at 968.927 kb on + strand at 968.927 kb on + strand at 968.927 kb on + strand at 968.927 kb on + strand at 968.928 kb on - strand at 968.928 kb on - strand at 968.928 kb on - strand at 968.929 kb on + strand at 968.929 kb on + strand at 969.025 kb on + strand at 969.026 kb on - strand at 969.026 kb on - strand at 969.026 kb on - strand at 969.094 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.099 kb on - strand, within AO353_04490 at 969.099 kb on - strand, within AO353_04490 at 969.134 kb on + strand, within AO353_04490 at 969.134 kb on + strand, within AO353_04490 at 969.135 kb on - strand, within AO353_04490 at 969.308 kb on + strand, within AO353_04490 at 969.308 kb on + strand, within AO353_04490 at 969.308 kb on + strand, within AO353_04490 at 969.308 kb on + strand, within AO353_04490 at 969.309 kb on - strand, within AO353_04490 at 969.335 kb on + strand, within AO353_04490 at 969.335 kb on + strand, within AO353_04490 at 969.335 kb on + strand, within AO353_04490 at 969.335 kb on + strand, within AO353_04490 at 969.336 kb on - strand, within AO353_04490 at 969.336 kb on - strand, within AO353_04490 at 969.446 kb on + strand, within AO353_04490 at 969.446 kb on + strand, within AO353_04490 at 969.447 kb on - strand, within AO353_04490 at 969.447 kb on - strand, within AO353_04490 at 969.569 kb on + strand, within AO353_04490 at 969.569 kb on + strand, within AO353_04490 at 969.569 kb on + strand, within AO353_04490 at 969.569 kb on + strand, within AO353_04490 at 969.569 kb on + strand, within AO353_04490 at 969.570 kb on - strand, within AO353_04490 at 969.570 kb on - strand, within AO353_04490 at 969.570 kb on - strand, within AO353_04490 at 969.570 kb on - strand, within AO353_04490 at 969.577 kb on + strand, within AO353_04490 at 969.577 kb on + strand, within AO353_04490 at 969.577 kb on + strand, within AO353_04490
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 963,858 + +0.6 963,858 + +0.8 963,858 + -0.8 963,858 + -1.4 963,858 + +1.2 963,859 - -0.4 963,867 + -0.1 963,867 + +0.7 963,867 + +2.3 963,867 + +0.9 963,868 - -1.3 963,868 - -0.1 963,897 + -0.3 963,897 + +1.7 963,898 - +0.1 963,898 - -0.1 964,293 - +0.9 964,293 - -0.7 964,293 - +0.9 964,293 - +0.1 964,293 - +0.5 964,293 - -1.0 964,293 - -1.4 964,293 - +0.3 964,293 - +0.6 964,293 - -0.1 964,293 - +0.3 964,293 - -1.5 964,386 + +2.2 964,386 + +1.5 964,387 - -0.5 964,387 - +0.9 964,424 + -0.4 964,424 + -0.3 964,425 - +0.1 964,467 + -0.1 964,482 + -1.1 964,483 - AO353_04480 0.14 +0.9 964,483 - AO353_04480 0.14 +0.2 964,591 + AO353_04480 0.49 -0.1 964,659 + AO353_04480 0.71 +2.2 964,659 + AO353_04480 0.71 -1.7 964,659 + AO353_04480 0.71 +1.6 964,660 - AO353_04480 0.71 -1.4 964,660 - AO353_04480 0.71 -0.7 964,660 - AO353_04480 0.71 +1.4 964,660 - AO353_04480 0.71 +0.3 964,660 - AO353_04480 0.71 +2.7 964,660 - AO353_04480 0.71 +0.3 964,660 - AO353_04480 0.71 +0.7 964,746 + -0.2 964,746 + -1.1 964,746 + -1.8 964,747 - -0.6 964,747 - -2.1 964,747 - -0.3 964,757 + -1.1 964,757 + +0.3 964,757 + +0.3 964,757 + +2.1 964,758 - +1.0 964,758 - +0.4 964,758 - +0.3 964,758 - -1.4 964,758 - +0.4 964,758 - +1.5 964,758 - +0.1 964,758 - -0.8 964,758 - -0.2 964,758 - -1.0 964,758 - -1.0 968,734 - +2.2 968,811 - -0.5 968,877 + -2.1 968,877 + +1.2 968,877 + +2.3 968,894 - +2.5 968,927 + +0.6 968,927 + -1.3 968,927 + -0.7 968,927 + +0.1 968,927 + +0.9 968,928 - -0.9 968,928 - -0.4 968,928 - -0.4 968,929 + +1.4 968,929 + +1.1 969,025 + +1.0 969,026 - +1.1 969,026 - +1.6 969,026 - -0.2 969,094 + AO353_04490 0.11 +1.2 969,098 + AO353_04490 0.11 +2.1 969,098 + AO353_04490 0.11 +0.5 969,098 + AO353_04490 0.11 -0.2 969,098 + AO353_04490 0.11 +1.5 969,098 + AO353_04490 0.11 -0.1 969,098 + AO353_04490 0.11 -0.7 969,098 + AO353_04490 0.11 -0.7 969,099 - AO353_04490 0.11 +1.1 969,099 - AO353_04490 0.11 +1.1 969,134 + AO353_04490 0.13 +1.7 969,134 + AO353_04490 0.13 -0.7 969,135 - AO353_04490 0.13 -0.1 969,308 + AO353_04490 0.25 +0.3 969,308 + AO353_04490 0.25 +0.1 969,308 + AO353_04490 0.25 +0.9 969,308 + AO353_04490 0.25 +0.2 969,309 - AO353_04490 0.25 -0.6 969,335 + AO353_04490 0.27 -0.4 969,335 + AO353_04490 0.27 +0.3 969,335 + AO353_04490 0.27 -0.7 969,335 + AO353_04490 0.27 +0.2 969,336 - AO353_04490 0.27 +0.2 969,336 - AO353_04490 0.27 +3.5 969,446 + AO353_04490 0.35 -0.1 969,446 + AO353_04490 0.35 +1.8 969,447 - AO353_04490 0.35 +2.2 969,447 - AO353_04490 0.35 +0.9 969,569 + AO353_04490 0.43 +1.1 969,569 + AO353_04490 0.43 +0.9 969,569 + AO353_04490 0.43 +2.1 969,569 + AO353_04490 0.43 -1.7 969,569 + AO353_04490 0.43 -1.4 969,570 - AO353_04490 0.43 +2.5 969,570 - AO353_04490 0.43 +1.4 969,570 - AO353_04490 0.43 +0.1 969,570 - AO353_04490 0.43 -0.1 969,577 + AO353_04490 0.44 +0.9 969,577 + AO353_04490 0.44 +2.7 969,577 + AO353_04490 0.44 +0.3
Or see this region's nucleotide sequence