Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04110 and AO353_04115 are separated by 156 nucleotides AO353_04115 and AO353_04120 overlap by 4 nucleotides AO353_04120 and AO353_04125 are separated by 74 nucleotides
AO353_04110: AO353_04110 - hypothetical protein, at 882,546 to 883,454
_04110
AO353_04115: AO353_04115 - dihydroorotase, at 883,611 to 884,657
_04115
AO353_04120: AO353_04120 - ribonuclease T, at 884,654 to 885,328
_04120
AO353_04125: AO353_04125 - alkyl hydroperoxide reductase, at 885,403 to 886,005
_04125
Position (kb) 883
884
885 Strain fitness (log2 ratio) -1
0
1
2
3 at 882.952 kb on + strand, within AO353_04110 at 882.952 kb on + strand, within AO353_04110 at 882.953 kb on - strand, within AO353_04110 at 882.953 kb on - strand, within AO353_04110 at 882.989 kb on - strand, within AO353_04110 at 883.057 kb on + strand, within AO353_04110 at 883.057 kb on + strand, within AO353_04110 at 883.058 kb on - strand, within AO353_04110 at 883.058 kb on - strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.437 kb on + strand at 883.437 kb on + strand at 883.437 kb on + strand at 883.441 kb on + strand at 883.441 kb on + strand at 883.441 kb on + strand at 883.441 kb on + strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.474 kb on + strand at 883.474 kb on + strand at 883.474 kb on + strand at 883.475 kb on - strand at 883.475 kb on - strand at 883.475 kb on - strand at 883.475 kb on - strand at 883.492 kb on - strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.501 kb on + strand at 883.501 kb on + strand at 883.501 kb on + strand at 883.501 kb on + strand at 883.501 kb on + strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.509 kb on - strand at 883.509 kb on - strand at 883.509 kb on - strand at 883.519 kb on + strand at 883.652 kb on + strand at 885.386 kb on + strand at 885.386 kb on + strand at 885.404 kb on + strand at 885.404 kb on + strand at 885.404 kb on + strand at 885.404 kb on + strand at 885.404 kb on + strand at 885.404 kb on + strand at 885.405 kb on - strand at 885.405 kb on - strand at 885.405 kb on - strand at 885.432 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 882,952 + AO353_04110 0.45 -0.1 882,952 + AO353_04110 0.45 -0.5 882,953 - AO353_04110 0.45 -0.1 882,953 - AO353_04110 0.45 -0.7 882,989 - AO353_04110 0.49 +0.3 883,057 + AO353_04110 0.56 -0.3 883,057 + AO353_04110 0.56 +1.1 883,058 - AO353_04110 0.56 +0.3 883,058 - AO353_04110 0.56 +0.9 883,249 + AO353_04110 0.77 -0.9 883,249 + AO353_04110 0.77 +0.5 883,249 + AO353_04110 0.77 +1.9 883,250 - AO353_04110 0.77 +0.0 883,250 - AO353_04110 0.77 +0.1 883,250 - AO353_04110 0.77 +0.3 883,250 - AO353_04110 0.77 -0.8 883,437 + -1.7 883,437 + +0.2 883,437 + -1.0 883,441 + -0.7 883,441 + +0.3 883,441 + -0.1 883,441 + -1.3 883,442 - -0.9 883,442 - -0.7 883,442 - -0.9 883,442 - -0.1 883,442 - +0.6 883,442 - -0.8 883,442 - -0.5 883,474 + +0.3 883,474 + -0.5 883,474 + -1.3 883,475 - -0.8 883,475 - -0.9 883,475 - -0.1 883,475 - +0.7 883,492 - -0.1 883,497 + +0.6 883,497 + +1.2 883,497 + +1.5 883,497 + +1.6 883,497 + -1.0 883,497 + -0.9 883,497 + +2.2 883,497 + +0.2 883,497 + +1.9 883,497 + +0.4 883,497 + +0.5 883,497 + +0.3 883,497 + +1.2 883,497 + +2.5 883,497 + -0.3 883,497 + -0.7 883,497 + -0.1 883,497 + -0.4 883,497 + +1.7 883,498 - -0.2 883,498 - -0.1 883,498 - +0.9 883,498 - -0.3 883,498 - -0.2 883,498 - +0.9 883,498 - -0.6 883,498 - +0.6 883,498 - +0.9 883,498 - -1.1 883,498 - +0.2 883,498 - +1.2 883,498 - +0.3 883,498 - +1.2 883,498 - -0.1 883,498 - +0.7 883,498 - -0.1 883,498 - -0.3 883,498 - -0.0 883,498 - +0.9 883,498 - +0.4 883,498 - +2.2 883,498 - +0.6 883,501 + -0.8 883,501 + +1.9 883,501 + +0.4 883,501 + -0.1 883,501 + +1.2 883,502 - -1.1 883,502 - +0.9 883,502 - +0.9 883,502 - -0.3 883,502 - -0.0 883,502 - +1.6 883,502 - +0.2 883,508 + +1.6 883,508 + -0.3 883,508 + -1.7 883,508 + +0.3 883,508 + +0.0 883,508 + +1.6 883,508 + +3.7 883,508 + +0.4 883,508 + -0.1 883,509 - +0.2 883,509 - -0.4 883,509 - +0.9 883,519 + +0.9 883,652 + -1.1 885,386 + +1.7 885,386 + +0.1 885,404 + -1.4 885,404 + +0.1 885,404 + +2.5 885,404 + -1.1 885,404 + +0.7 885,404 + +0.9 885,405 - +0.6 885,405 - -0.4 885,405 - +0.5 885,432 - -0.5
Or see this region's nucleotide sequence