Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03900 and AO353_03905 are separated by 156 nucleotides AO353_03905 and AO353_03910 are separated by 106 nucleotides
AO353_03900: AO353_03900 - disulfide bond formation protein DsbA, at 834,272 to 835,789
_03900
AO353_03905: AO353_03905 - ATPase, at 835,946 to 836,788
_03905
AO353_03910: AO353_03910 - 3-beta hydroxysteroid dehydrogenase, at 836,895 to 837,893
_03910
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 835.238 kb on + strand, within AO353_03900 at 835.238 kb on + strand, within AO353_03900 at 835.238 kb on + strand, within AO353_03900 at 835.239 kb on - strand, within AO353_03900 at 835.275 kb on - strand, within AO353_03900 at 835.830 kb on - strand at 835.830 kb on - strand at 835.846 kb on - strand at 835.846 kb on - strand at 835.846 kb on - strand at 835.851 kb on + strand at 835.888 kb on + strand at 835.888 kb on + strand at 835.888 kb on + strand at 835.888 kb on + strand at 835.888 kb on + strand at 835.888 kb on + strand at 835.888 kb on + strand at 835.889 kb on - strand at 835.889 kb on - strand at 835.908 kb on + strand at 835.908 kb on + strand at 835.908 kb on + strand at 835.909 kb on - strand at 835.909 kb on - strand at 835.909 kb on - strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.942 kb on + strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 835.943 kb on - strand at 836.105 kb on + strand, within AO353_03905 at 836.105 kb on + strand, within AO353_03905 at 836.106 kb on - strand, within AO353_03905 at 836.357 kb on + strand, within AO353_03905 at 836.357 kb on + strand, within AO353_03905 at 836.358 kb on - strand, within AO353_03905 at 836.476 kb on + strand, within AO353_03905 at 836.476 kb on + strand, within AO353_03905 at 836.476 kb on + strand, within AO353_03905 at 836.477 kb on - strand, within AO353_03905 at 836.477 kb on - strand, within AO353_03905 at 836.648 kb on + strand, within AO353_03905 at 836.648 kb on + strand, within AO353_03905 at 836.649 kb on - strand, within AO353_03905 at 836.649 kb on - strand, within AO353_03905 at 836.649 kb on - strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.678 kb on + strand, within AO353_03905 at 836.679 kb on - strand, within AO353_03905 at 836.679 kb on - strand, within AO353_03905 at 836.679 kb on - strand, within AO353_03905 at 836.679 kb on - strand, within AO353_03905 at 836.679 kb on - strand, within AO353_03905 at 836.679 kb on - strand, within AO353_03905 at 836.679 kb on - strand, within AO353_03905 at 836.679 kb on - strand, within AO353_03905 at 836.679 kb on - strand, within AO353_03905 at 836.679 kb on - strand at 836.679 kb on - strand, within AO353_03905 at 836.679 kb on - strand, within AO353_03905 at 836.753 kb on + strand at 836.753 kb on + strand at 836.754 kb on - strand at 836.754 kb on - strand at 836.825 kb on + strand at 836.826 kb on - strand at 836.826 kb on - strand at 836.838 kb on + strand at 836.838 kb on + strand at 836.838 kb on + strand at 836.838 kb on + strand at 836.839 kb on - strand at 836.839 kb on - strand at 836.839 kb on - strand at 836.839 kb on - strand at 836.839 kb on - strand at 836.840 kb on + strand at 836.840 kb on + strand at 836.840 kb on + strand at 836.840 kb on + strand at 836.841 kb on - strand at 836.841 kb on - strand at 836.841 kb on - strand at 836.896 kb on + strand at 836.896 kb on + strand at 836.897 kb on - strand at 836.974 kb on + strand at 836.974 kb on + strand at 836.975 kb on - strand at 836.975 kb on - strand at 836.975 kb on - strand at 836.975 kb on - strand at 836.983 kb on + strand at 836.983 kb on + strand at 836.983 kb on + strand at 836.983 kb on + strand at 836.984 kb on - strand at 836.984 kb on - strand at 836.984 kb on - strand at 836.984 kb on - strand at 837.113 kb on - strand, within AO353_03910 at 837.124 kb on + strand, within AO353_03910 at 837.124 kb on + strand, within AO353_03910 at 837.125 kb on - strand, within AO353_03910 at 837.168 kb on + strand, within AO353_03910 at 837.168 kb on + strand, within AO353_03910 at 837.168 kb on + strand, within AO353_03910 at 837.168 kb on + strand, within AO353_03910 at 837.168 kb on + strand, within AO353_03910 at 837.169 kb on - strand, within AO353_03910 at 837.169 kb on - strand, within AO353_03910 at 837.169 kb on - strand, within AO353_03910 at 837.169 kb on - strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.172 kb on + strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.173 kb on - strand, within AO353_03910 at 837.220 kb on + strand, within AO353_03910 at 837.220 kb on + strand, within AO353_03910 at 837.220 kb on + strand, within AO353_03910 at 837.220 kb on + strand, within AO353_03910 at 837.220 kb on + strand, within AO353_03910 at 837.221 kb on - strand, within AO353_03910 at 837.221 kb on - strand, within AO353_03910 at 837.221 kb on - strand, within AO353_03910 at 837.221 kb on - strand, within AO353_03910 at 837.221 kb on - strand, within AO353_03910 at 837.221 kb on - strand, within AO353_03910 at 837.221 kb on - strand, within AO353_03910 at 837.221 kb on - strand, within AO353_03910 at 837.417 kb on + strand, within AO353_03910 at 837.417 kb on + strand, within AO353_03910 at 837.417 kb on + strand, within AO353_03910 at 837.417 kb on + strand, within AO353_03910 at 837.417 kb on + strand, within AO353_03910 at 837.417 kb on + strand, within AO353_03910 at 837.418 kb on - strand, within AO353_03910 at 837.418 kb on - strand, within AO353_03910 at 837.466 kb on + strand, within AO353_03910 at 837.466 kb on + strand, within AO353_03910 at 837.466 kb on + strand, within AO353_03910 at 837.466 kb on + strand, within AO353_03910 at 837.466 kb on + strand, within AO353_03910 at 837.466 kb on + strand, within AO353_03910 at 837.467 kb on - strand, within AO353_03910 at 837.467 kb on - strand, within AO353_03910 at 837.504 kb on + strand, within AO353_03910 at 837.547 kb on + strand, within AO353_03910 at 837.547 kb on + strand, within AO353_03910 at 837.547 kb on + strand, within AO353_03910 at 837.548 kb on - strand, within AO353_03910
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 835,238 + AO353_03900 0.64 +0.6 835,238 + AO353_03900 0.64 +0.1 835,238 + AO353_03900 0.64 -0.7 835,239 - AO353_03900 0.64 +0.2 835,275 - AO353_03900 0.66 +2.1 835,830 - +0.5 835,830 - +0.1 835,846 - -0.7 835,846 - +0.2 835,846 - -0.3 835,851 + -0.3 835,888 + -1.0 835,888 + -0.3 835,888 + +1.1 835,888 + +1.3 835,888 + -0.7 835,888 + -0.7 835,888 + +0.4 835,889 - -0.3 835,889 - +0.9 835,908 + +0.2 835,908 + -0.1 835,908 + +2.9 835,909 - -1.4 835,909 - -0.5 835,909 - +0.3 835,940 + +1.3 835,940 + -0.1 835,940 + +0.1 835,940 + +0.2 835,940 + +1.2 835,942 + +0.6 835,942 + -0.2 835,942 + -0.9 835,942 + +0.7 835,942 + -0.3 835,942 + -0.6 835,942 + -0.7 835,942 + +0.2 835,942 + +0.3 835,942 + +0.2 835,942 + -2.1 835,942 + +0.5 835,942 + -1.4 835,942 + +0.9 835,942 + +0.6 835,942 + -1.7 835,942 + -0.2 835,942 + -1.7 835,942 + -0.4 835,942 + -0.3 835,942 + -0.7 835,942 + -1.1 835,942 + +0.0 835,942 + -1.4 835,942 + -0.3 835,942 + -0.1 835,942 + -1.7 835,942 + +0.3 835,942 + +1.5 835,943 - -0.7 835,943 - +1.4 835,943 - +0.5 835,943 - +1.6 835,943 - -1.7 835,943 - +0.7 835,943 - -0.3 835,943 - +0.6 835,943 - -0.6 835,943 - +0.2 835,943 - -0.1 835,943 - +0.2 835,943 - -0.2 835,943 - +0.6 835,943 - +1.2 835,943 - +0.4 835,943 - +0.2 835,943 - +0.7 835,943 - -1.1 836,105 + AO353_03905 0.19 +0.0 836,105 + AO353_03905 0.19 +1.2 836,106 - AO353_03905 0.19 -0.3 836,357 + AO353_03905 0.49 +0.1 836,357 + AO353_03905 0.49 -0.7 836,358 - AO353_03905 0.49 -0.2 836,476 + AO353_03905 0.63 -0.2 836,476 + AO353_03905 0.63 -0.5 836,476 + AO353_03905 0.63 -1.4 836,477 - AO353_03905 0.63 +0.7 836,477 - AO353_03905 0.63 +0.5 836,648 + AO353_03905 0.83 +1.6 836,648 + AO353_03905 0.83 +0.6 836,649 - AO353_03905 0.83 +1.3 836,649 - AO353_03905 0.83 -0.7 836,649 - AO353_03905 0.83 -0.7 836,678 + AO353_03905 0.87 +0.1 836,678 + AO353_03905 0.87 -0.1 836,678 + AO353_03905 0.87 +2.3 836,678 + AO353_03905 0.87 +1.4 836,678 + AO353_03905 0.87 +0.2 836,678 + AO353_03905 0.87 +0.9 836,678 + AO353_03905 0.87 +0.5 836,678 + AO353_03905 0.87 +0.5 836,678 + AO353_03905 0.87 -0.3 836,678 + AO353_03905 0.87 +0.5 836,678 + AO353_03905 0.87 +0.5 836,678 + AO353_03905 0.87 +0.5 836,678 + AO353_03905 0.87 -1.1 836,678 + AO353_03905 0.87 -0.7 836,679 - AO353_03905 0.87 -0.1 836,679 - AO353_03905 0.87 +2.9 836,679 - AO353_03905 0.87 -0.1 836,679 - AO353_03905 0.87 -0.7 836,679 - AO353_03905 0.87 +1.3 836,679 - AO353_03905 0.87 -0.5 836,679 - AO353_03905 0.87 +1.9 836,679 - AO353_03905 0.87 +0.5 836,679 - AO353_03905 0.87 +1.0 836,679 - +0.5 836,679 - AO353_03905 0.87 -1.0 836,679 - AO353_03905 0.87 -0.7 836,753 + -0.5 836,753 + +0.2 836,754 - +1.2 836,754 - +2.5 836,825 + +1.3 836,826 - +0.9 836,826 - -1.1 836,838 + -1.6 836,838 + +0.1 836,838 + +0.2 836,838 + +0.3 836,839 - +0.1 836,839 - +0.6 836,839 - +0.7 836,839 - +0.9 836,839 - -0.6 836,840 + +0.9 836,840 + -0.1 836,840 + -0.7 836,840 + +0.3 836,841 - -1.4 836,841 - +0.3 836,841 - -1.4 836,896 + +0.9 836,896 + +0.3 836,897 - +0.5 836,974 + -0.1 836,974 + -1.0 836,975 - +0.1 836,975 - +0.9 836,975 - -0.9 836,975 - +0.9 836,983 + +0.7 836,983 + -2.4 836,983 + +0.0 836,983 + +3.7 836,984 - -1.4 836,984 - +0.4 836,984 - +0.6 836,984 - +0.8 837,113 - AO353_03910 0.22 +1.2 837,124 + AO353_03910 0.23 +0.9 837,124 + AO353_03910 0.23 +0.5 837,125 - AO353_03910 0.23 +0.4 837,168 + AO353_03910 0.27 +0.2 837,168 + AO353_03910 0.27 -0.1 837,168 + AO353_03910 0.27 -0.4 837,168 + AO353_03910 0.27 -0.1 837,168 + AO353_03910 0.27 -0.1 837,169 - AO353_03910 0.27 +0.2 837,169 - AO353_03910 0.27 +1.1 837,169 - AO353_03910 0.27 +0.1 837,169 - AO353_03910 0.27 -1.4 837,172 + AO353_03910 0.28 -0.1 837,172 + AO353_03910 0.28 +1.6 837,172 + AO353_03910 0.28 +0.2 837,172 + AO353_03910 0.28 +0.2 837,172 + AO353_03910 0.28 +0.9 837,172 + AO353_03910 0.28 +0.9 837,172 + AO353_03910 0.28 -0.9 837,172 + AO353_03910 0.28 -0.2 837,172 + AO353_03910 0.28 -0.5 837,172 + AO353_03910 0.28 +0.2 837,172 + AO353_03910 0.28 +0.2 837,172 + AO353_03910 0.28 +1.1 837,173 - AO353_03910 0.28 +0.5 837,173 - AO353_03910 0.28 -0.1 837,173 - AO353_03910 0.28 -0.3 837,173 - AO353_03910 0.28 +0.7 837,173 - AO353_03910 0.28 +0.3 837,173 - AO353_03910 0.28 +1.5 837,173 - AO353_03910 0.28 -0.5 837,173 - AO353_03910 0.28 +0.0 837,173 - AO353_03910 0.28 +0.5 837,173 - AO353_03910 0.28 -1.8 837,173 - AO353_03910 0.28 +2.2 837,173 - AO353_03910 0.28 -1.7 837,173 - AO353_03910 0.28 -1.1 837,173 - AO353_03910 0.28 +0.8 837,173 - AO353_03910 0.28 +0.7 837,173 - AO353_03910 0.28 +0.0 837,220 + AO353_03910 0.33 -1.3 837,220 + AO353_03910 0.33 +0.4 837,220 + AO353_03910 0.33 -1.9 837,220 + AO353_03910 0.33 -0.4 837,220 + AO353_03910 0.33 +0.2 837,221 - AO353_03910 0.33 -0.2 837,221 - AO353_03910 0.33 +2.5 837,221 - AO353_03910 0.33 -0.8 837,221 - AO353_03910 0.33 -0.7 837,221 - AO353_03910 0.33 -0.3 837,221 - AO353_03910 0.33 -0.7 837,221 - AO353_03910 0.33 -0.1 837,221 - AO353_03910 0.33 -1.0 837,417 + AO353_03910 0.52 -1.1 837,417 + AO353_03910 0.52 +0.9 837,417 + AO353_03910 0.52 +1.3 837,417 + AO353_03910 0.52 +0.6 837,417 + AO353_03910 0.52 +0.8 837,417 + AO353_03910 0.52 +0.2 837,418 - AO353_03910 0.52 -1.7 837,418 - AO353_03910 0.52 +0.5 837,466 + AO353_03910 0.57 -0.9 837,466 + AO353_03910 0.57 +0.6 837,466 + AO353_03910 0.57 +1.5 837,466 + AO353_03910 0.57 -0.3 837,466 + AO353_03910 0.57 -0.1 837,466 + AO353_03910 0.57 -0.1 837,467 - AO353_03910 0.57 +1.9 837,467 - AO353_03910 0.57 +1.5 837,504 + AO353_03910 0.61 +0.8 837,547 + AO353_03910 0.65 -0.1 837,547 + AO353_03910 0.65 -0.7 837,547 + AO353_03910 0.65 -1.1 837,548 - AO353_03910 0.65 -1.7
Or see this region's nucleotide sequence