Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03475

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03470 and AO353_03475 are separated by 71 nucleotidesAO353_03475 and AO353_03480 are separated by 221 nucleotides AO353_03470: AO353_03470 - arginine deiminase, at 741,753 to 743,009 _03470 AO353_03475: AO353_03475 - ornithine carbamoyltransferase, at 743,081 to 744,091 _03475 AO353_03480: AO353_03480 - carbamate kinase, at 744,313 to 745,242 _03480 Position (kb) 743 744 745Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.339 kb on - strand, within AO353_03470at 742.339 kb on - strand, within AO353_03470at 742.877 kb on + strand, within AO353_03470at 742.877 kb on + strand, within AO353_03470at 742.877 kb on + strand, within AO353_03470at 742.877 kb on + strand, within AO353_03470at 742.877 kb on + strand, within AO353_03470at 742.878 kb on - strand, within AO353_03470at 742.878 kb on - strand, within AO353_03470at 742.878 kb on - strand, within AO353_03470at 742.878 kb on - strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.882 kb on - strand, within AO353_03470at 742.882 kb on - strand, within AO353_03470at 742.882 kb on - strand, within AO353_03470at 743.005 kb on - strandat 743.005 kb on - strandat 743.005 kb on - strandat 743.005 kb on - strandat 743.005 kb on - strandat 743.007 kb on + strandat 743.032 kb on + strandat 743.033 kb on - strandat 743.033 kb on - strandat 743.034 kb on + strandat 743.034 kb on + strandat 743.034 kb on + strandat 743.034 kb on + strandat 743.035 kb on - strandat 743.035 kb on - strandat 743.035 kb on - strandat 743.035 kb on - strandat 743.099 kb on - strandat 743.147 kb on + strandat 743.147 kb on + strandat 743.147 kb on + strandat 743.148 kb on - strandat 743.148 kb on - strandat 743.148 kb on - strandat 743.186 kb on + strand, within AO353_03475at 743.186 kb on + strand, within AO353_03475at 743.187 kb on - strand, within AO353_03475at 743.218 kb on + strand, within AO353_03475at 743.218 kb on + strand, within AO353_03475at 743.218 kb on + strand, within AO353_03475at 743.219 kb on - strand, within AO353_03475at 743.219 kb on - strand, within AO353_03475at 743.219 kb on - strand, within AO353_03475at 743.219 kb on - strand, within AO353_03475at 743.219 kb on - strand, within AO353_03475at 743.225 kb on - strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.555 kb on + strand, within AO353_03475at 743.556 kb on - strand, within AO353_03475at 743.556 kb on - strand, within AO353_03475at 743.556 kb on - strand, within AO353_03475at 743.561 kb on + strand, within AO353_03475at 743.561 kb on + strand, within AO353_03475at 743.561 kb on + strand, within AO353_03475at 743.561 kb on + strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.579 kb on + strand, within AO353_03475at 743.631 kb on + strand, within AO353_03475at 743.631 kb on + strand, within AO353_03475at 743.631 kb on + strand, within AO353_03475at 743.631 kb on + strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.719 kb on + strand, within AO353_03475at 743.841 kb on - strand, within AO353_03475at 743.854 kb on + strand, within AO353_03475at 743.986 kb on - strand, within AO353_03475at 743.986 kb on - strand, within AO353_03475at 743.997 kb on + strandat 743.997 kb on + strandat 743.997 kb on + strandat 743.998 kb on - strandat 743.998 kb on - strandat 744.089 kb on + strandat 744.089 kb on + strandat 744.089 kb on + strandat 744.089 kb on + strandat 744.089 kb on + strandat 744.089 kb on + strandat 744.089 kb on + strandat 744.089 kb on + strandat 744.089 kb on + strandat 744.090 kb on - strandat 744.090 kb on - strandat 744.090 kb on - strandat 744.090 kb on - strandat 744.090 kb on - strandat 744.090 kb on - strandat 744.090 kb on - strandat 744.180 kb on + strandat 744.180 kb on + strandat 744.214 kb on + strandat 744.280 kb on + strandat 744.312 kb on + strandat 744.312 kb on + strandat 744.313 kb on - strandat 744.393 kb on + strandat 744.502 kb on + strand, within AO353_03480at 744.502 kb on + strand, within AO353_03480at 744.503 kb on - strand, within AO353_03480at 744.503 kb on - strand, within AO353_03480at 744.503 kb on - strand, within AO353_03480at 744.565 kb on + strandat 744.565 kb on + strand, within AO353_03480at 744.566 kb on - strand, within AO353_03480at 744.694 kb on + strand, within AO353_03480at 744.694 kb on + strand, within AO353_03480at 744.694 kb on + strand, within AO353_03480at 744.695 kb on - strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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742,266 + AO353_03470 0.41 +0.8
742,266 + AO353_03470 0.41 -0.7
742,266 + AO353_03470 0.41 +0.1
742,266 + AO353_03470 0.41 -1.3
742,266 + AO353_03470 0.41 +1.1
742,266 + AO353_03470 0.41 +0.3
742,266 + AO353_03470 0.41 +2.4
742,339 - AO353_03470 0.47 -0.7
742,339 - AO353_03470 0.47 -0.7
742,877 + AO353_03470 0.89 -0.7
742,877 + AO353_03470 0.89 -2.2
742,877 + AO353_03470 0.89 +1.8
742,877 + AO353_03470 0.89 -0.2
742,877 + AO353_03470 0.89 +0.8
742,878 - AO353_03470 0.89 +1.4
742,878 - AO353_03470 0.89 -0.5
742,878 - AO353_03470 0.89 -1.0
742,878 - AO353_03470 0.89 +1.3
742,881 + AO353_03470 0.90 -1.1
742,881 + AO353_03470 0.90 -1.7
742,881 + AO353_03470 0.90 -1.2
742,881 + AO353_03470 0.90 +0.4
742,881 + AO353_03470 0.90 -0.2
742,881 + AO353_03470 0.90 -0.5
742,882 - AO353_03470 0.90 +0.0
742,882 - AO353_03470 0.90 -1.9
742,882 - AO353_03470 0.90 -0.2
743,005 - +0.3
743,005 - -0.7
743,005 - -0.2
743,005 - +0.6
743,005 - -0.3
743,007 + +1.8
743,032 + -1.0
743,033 - +0.8
743,033 - +2.1
743,034 + +0.8
743,034 + -0.7
743,034 + -1.3
743,034 + -1.5
743,035 - +0.6
743,035 - +0.6
743,035 - +0.3
743,035 - +0.8
743,099 - -2.0
743,147 + -1.0
743,147 + +0.8
743,147 + -0.4
743,148 - +0.3
743,148 - +0.2
743,148 - +0.5
743,186 + AO353_03475 0.10 +0.1
743,186 + AO353_03475 0.10 -0.5
743,187 - AO353_03475 0.10 +0.7
743,218 + AO353_03475 0.14 -0.5
743,218 + AO353_03475 0.14 -0.3
743,218 + AO353_03475 0.14 -0.1
743,219 - AO353_03475 0.14 +1.2
743,219 - AO353_03475 0.14 +0.3
743,219 - AO353_03475 0.14 -0.2
743,219 - AO353_03475 0.14 -1.2
743,219 - AO353_03475 0.14 +0.8
743,225 - AO353_03475 0.14 -0.6
743,309 + AO353_03475 0.23 +0.6
743,309 + AO353_03475 0.23 -0.5
743,309 + AO353_03475 0.23 +1.2
743,309 + AO353_03475 0.23 -2.9
743,309 + AO353_03475 0.23 -1.5
743,309 + AO353_03475 0.23 -0.2
743,309 + AO353_03475 0.23 +0.7
743,310 - AO353_03475 0.23 +0.4
743,310 - AO353_03475 0.23 +1.3
743,310 - AO353_03475 0.23 -1.5
743,310 - AO353_03475 0.23 -0.5
743,310 - AO353_03475 0.23 -0.5
743,310 - AO353_03475 0.23 +0.4
743,310 - AO353_03475 0.23 -1.5
743,310 - AO353_03475 0.23 -0.4
743,310 - AO353_03475 0.23 +0.3
743,310 - AO353_03475 0.23 -0.6
743,555 + AO353_03475 0.47 +0.8
743,556 - AO353_03475 0.47 -0.6
743,556 - AO353_03475 0.47 +0.1
743,556 - AO353_03475 0.47 +1.4
743,561 + AO353_03475 0.47 +1.1
743,561 + AO353_03475 0.47 -0.3
743,561 + AO353_03475 0.47 -2.0
743,561 + AO353_03475 0.47 +0.1
743,562 - AO353_03475 0.48 +1.8
743,562 - AO353_03475 0.48 +0.8
743,562 - AO353_03475 0.48 +0.1
743,562 - AO353_03475 0.48 +0.2
743,562 - AO353_03475 0.48 -0.0
743,562 - AO353_03475 0.48 +1.8
743,562 - AO353_03475 0.48 +0.3
743,579 + AO353_03475 0.49 +0.1
743,631 + AO353_03475 0.54 -0.7
743,631 + AO353_03475 0.54 -1.5
743,631 + AO353_03475 0.54 +0.3
743,631 + AO353_03475 0.54 -1.7
743,632 - AO353_03475 0.55 +0.0
743,632 - AO353_03475 0.55 +0.4
743,632 - AO353_03475 0.55 -1.3
743,632 - AO353_03475 0.55 -0.3
743,632 - AO353_03475 0.55 -0.3
743,632 - AO353_03475 0.55 +0.2
743,719 + AO353_03475 0.63 +1.4
743,841 - AO353_03475 0.75 -0.2
743,854 + AO353_03475 0.76 +0.4
743,986 - AO353_03475 0.90 +0.8
743,986 - AO353_03475 0.90 -1.7
743,997 + -0.2
743,997 + -0.7
743,997 + -0.5
743,998 - +0.5
743,998 - +0.6
744,089 + +0.3
744,089 + -0.3
744,089 + -0.5
744,089 + +0.3
744,089 + -0.5
744,089 + +0.3
744,089 + +0.6
744,089 + -0.2
744,089 + +1.2
744,090 - -1.0
744,090 - -0.2
744,090 - +1.8
744,090 - -0.7
744,090 - -0.3
744,090 - +2.4
744,090 - +0.4
744,180 + -0.9
744,180 + +0.8
744,214 + +0.8
744,280 + -2.4
744,312 + -0.3
744,312 + -0.3
744,313 - +0.3
744,393 + +0.8
744,502 + AO353_03480 0.20 +0.1
744,502 + AO353_03480 0.20 +0.3
744,503 - AO353_03480 0.20 -0.3
744,503 - AO353_03480 0.20 -0.6
744,503 - AO353_03480 0.20 -0.2
744,565 + -1.2
744,565 + AO353_03480 0.27 +0.8
744,566 - AO353_03480 0.27 -1.3
744,694 + AO353_03480 0.41 +0.8
744,694 + AO353_03480 0.41 +1.4
744,694 + AO353_03480 0.41 -0.2
744,695 - AO353_03480 0.41 -0.7
744,883 + AO353_03480 0.61 +0.8
744,883 + AO353_03480 0.61 -0.0
744,883 + AO353_03480 0.61 -0.2
744,883 + AO353_03480 0.61 -0.7
744,883 + AO353_03480 0.61 +0.5
744,883 + AO353_03480 0.61 -2.2
744,884 - AO353_03480 0.61 -0.2
744,884 - AO353_03480 0.61 +0.6
744,884 - AO353_03480 0.61 +0.1
744,884 - AO353_03480 0.61 -0.2
744,884 - AO353_03480 0.61 -0.1
744,884 - AO353_03480 0.61 -1.7

Or see this region's nucleotide sequence