Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03065 and AO353_03070 are separated by 664 nucleotides AO353_03070 and AO353_03075 are separated by 348 nucleotides
AO353_03065: AO353_03065 - hypothetical protein, at 655,273 to 655,536
_03065
AO353_03070: AO353_03070 - ribonucleotide-diphosphate reductase subunit beta, at 656,201 to 657,448
_03070
AO353_03075: AO353_03075 - phage antirepressor protein, at 657,797 to 658,345
_03075
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 655.201 kb on - strand at 655.201 kb on - strand at 655.201 kb on - strand at 655.201 kb on - strand at 655.201 kb on - strand at 655.201 kb on - strand at 655.201 kb on - strand at 655.201 kb on - strand at 655.201 kb on - strand at 655.201 kb on - strand at 655.201 kb on - strand at 655.201 kb on - strand at 655.201 kb on - strand at 655.204 kb on + strand at 655.204 kb on + strand at 655.205 kb on - strand at 655.255 kb on + strand at 655.255 kb on + strand at 655.255 kb on + strand at 655.283 kb on + strand at 655.284 kb on - strand at 655.375 kb on + strand, within AO353_03065 at 655.375 kb on + strand, within AO353_03065 at 655.375 kb on + strand, within AO353_03065 at 655.375 kb on + strand, within AO353_03065 at 655.375 kb on + strand, within AO353_03065 at 655.376 kb on - strand, within AO353_03065 at 655.376 kb on - strand, within AO353_03065 at 655.381 kb on + strand, within AO353_03065 at 655.381 kb on + strand, within AO353_03065 at 655.381 kb on + strand, within AO353_03065 at 655.381 kb on + strand, within AO353_03065 at 655.381 kb on + strand, within AO353_03065 at 655.381 kb on + strand, within AO353_03065 at 655.381 kb on + strand, within AO353_03065 at 655.381 kb on + strand, within AO353_03065 at 655.381 kb on + strand, within AO353_03065 at 655.382 kb on - strand, within AO353_03065 at 655.382 kb on - strand, within AO353_03065 at 655.382 kb on - strand, within AO353_03065 at 655.382 kb on - strand, within AO353_03065 at 655.382 kb on - strand, within AO353_03065 at 655.410 kb on + strand, within AO353_03065 at 655.411 kb on - strand, within AO353_03065 at 655.411 kb on - strand, within AO353_03065 at 655.411 kb on - strand, within AO353_03065 at 655.427 kb on + strand, within AO353_03065 at 655.427 kb on + strand, within AO353_03065 at 655.427 kb on + strand, within AO353_03065 at 655.448 kb on + strand, within AO353_03065 at 655.448 kb on + strand, within AO353_03065 at 655.448 kb on + strand, within AO353_03065 at 655.449 kb on - strand, within AO353_03065 at 655.465 kb on + strand, within AO353_03065 at 655.465 kb on + strand, within AO353_03065 at 655.465 kb on + strand, within AO353_03065 at 655.465 kb on + strand, within AO353_03065 at 655.465 kb on + strand, within AO353_03065 at 655.465 kb on + strand, within AO353_03065 at 655.465 kb on + strand, within AO353_03065 at 655.465 kb on + strand, within AO353_03065 at 655.466 kb on - strand, within AO353_03065 at 655.466 kb on - strand, within AO353_03065 at 655.491 kb on + strand, within AO353_03065 at 655.492 kb on - strand, within AO353_03065 at 655.492 kb on - strand, within AO353_03065 at 655.501 kb on + strand, within AO353_03065 at 655.508 kb on + strand, within AO353_03065 at 655.508 kb on + strand, within AO353_03065 at 655.509 kb on - strand, within AO353_03065 at 655.639 kb on + strand at 655.639 kb on + strand at 655.639 kb on + strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.645 kb on + strand at 655.645 kb on + strand at 655.645 kb on + strand at 655.645 kb on + strand at 655.646 kb on - strand at 655.646 kb on - strand at 655.646 kb on - strand at 655.646 kb on - strand at 655.650 kb on + strand at 655.650 kb on + strand at 655.651 kb on - strand at 655.863 kb on - strand at 655.863 kb on - strand at 655.945 kb on + strand at 655.945 kb on + strand at 655.945 kb on + strand at 655.945 kb on + strand at 655.945 kb on + strand at 655.947 kb on + strand at 655.947 kb on + strand at 655.958 kb on + strand at 655.958 kb on + strand at 655.982 kb on + strand at 656.029 kb on + strand at 656.061 kb on + strand at 656.086 kb on + strand at 656.086 kb on + strand at 656.086 kb on + strand at 656.086 kb on + strand at 657.480 kb on + strand at 657.480 kb on + strand at 657.480 kb on + strand at 657.480 kb on + strand at 657.480 kb on + strand at 657.481 kb on - strand at 657.484 kb on + strand at 657.485 kb on - strand at 657.535 kb on - strand at 657.535 kb on - strand at 657.554 kb on + strand at 657.554 kb on + strand at 657.554 kb on + strand at 657.555 kb on - strand at 657.555 kb on - strand at 657.555 kb on - strand at 657.555 kb on - strand at 657.555 kb on - strand at 657.555 kb on - strand at 657.555 kb on - strand at 657.561 kb on + strand at 657.562 kb on - strand at 657.562 kb on - strand at 657.562 kb on - strand at 657.570 kb on + strand at 657.570 kb on + strand at 657.600 kb on + strand at 657.600 kb on + strand at 657.609 kb on + strand at 657.609 kb on + strand at 657.609 kb on + strand at 657.609 kb on + strand at 657.609 kb on + strand at 657.609 kb on + strand at 657.610 kb on - strand at 657.629 kb on + strand at 657.629 kb on + strand at 657.645 kb on + strand at 657.645 kb on + strand at 657.645 kb on + strand at 657.645 kb on + strand at 657.646 kb on - strand at 657.646 kb on - strand at 657.720 kb on + strand at 657.720 kb on + strand at 657.720 kb on + strand at 657.720 kb on + strand at 657.720 kb on + strand at 657.721 kb on - strand at 657.738 kb on + strand at 657.739 kb on - strand at 657.739 kb on - strand at 657.739 kb on - strand at 657.749 kb on + strand at 657.749 kb on + strand at 657.749 kb on + strand at 657.749 kb on + strand at 657.750 kb on - strand at 657.750 kb on - strand at 657.750 kb on - strand at 657.778 kb on + strand at 657.778 kb on + strand at 657.778 kb on + strand at 657.778 kb on + strand at 657.778 kb on + strand at 657.779 kb on - strand at 657.779 kb on - strand at 657.779 kb on - strand at 657.779 kb on - strand at 657.779 kb on - strand at 657.779 kb on - strand at 657.779 kb on - strand at 657.779 kb on - strand at 657.779 kb on - strand at 657.779 kb on - strand at 657.779 kb on - strand at 657.782 kb on + strand at 657.782 kb on + strand at 657.782 kb on + strand at 657.782 kb on + strand at 657.782 kb on + strand at 657.782 kb on + strand at 657.782 kb on + strand at 657.783 kb on - strand at 657.783 kb on - strand at 657.783 kb on - strand at 657.783 kb on - strand at 657.783 kb on - strand at 657.783 kb on - strand at 657.783 kb on - strand at 657.796 kb on + strand at 657.797 kb on - strand at 657.797 kb on - strand at 657.813 kb on + strand at 657.814 kb on - strand at 657.814 kb on - strand at 657.846 kb on + strand at 657.847 kb on - strand at 657.847 kb on - strand at 657.929 kb on + strand, within AO353_03075 at 657.929 kb on + strand, within AO353_03075 at 657.929 kb on + strand, within AO353_03075 at 657.930 kb on - strand, within AO353_03075 at 657.930 kb on - strand, within AO353_03075 at 657.930 kb on - strand, within AO353_03075 at 657.930 kb on - strand, within AO353_03075 at 657.962 kb on + strand, within AO353_03075 at 657.962 kb on + strand, within AO353_03075 at 657.962 kb on + strand, within AO353_03075 at 657.962 kb on + strand, within AO353_03075 at 657.963 kb on - strand, within AO353_03075 at 657.963 kb on - strand, within AO353_03075 at 657.963 kb on - strand, within AO353_03075 at 657.963 kb on - strand, within AO353_03075 at 657.963 kb on - strand, within AO353_03075 at 658.073 kb on + strand, within AO353_03075 at 658.073 kb on + strand, within AO353_03075 at 658.073 kb on + strand, within AO353_03075 at 658.073 kb on + strand, within AO353_03075 at 658.073 kb on + strand, within AO353_03075 at 658.073 kb on + strand, within AO353_03075 at 658.073 kb on + strand, within AO353_03075 at 658.073 kb on + strand, within AO353_03075 at 658.073 kb on + strand, within AO353_03075 at 658.073 kb on + strand, within AO353_03075 at 658.073 kb on + strand, within AO353_03075 at 658.074 kb on - strand, within AO353_03075 at 658.074 kb on - strand, within AO353_03075 at 658.074 kb on - strand, within AO353_03075 at 658.074 kb on - strand, within AO353_03075 at 658.074 kb on - strand, within AO353_03075 at 658.074 kb on - strand, within AO353_03075 at 658.074 kb on - strand, within AO353_03075 at 658.074 kb on - strand, within AO353_03075 at 658.074 kb on - strand, within AO353_03075 at 658.074 kb on - strand, within AO353_03075 at 658.088 kb on + strand, within AO353_03075 at 658.088 kb on + strand, within AO353_03075 at 658.088 kb on + strand, within AO353_03075 at 658.088 kb on + strand, within AO353_03075 at 658.088 kb on + strand, within AO353_03075 at 658.089 kb on - strand, within AO353_03075 at 658.089 kb on - strand, within AO353_03075 at 658.089 kb on - strand, within AO353_03075 at 658.089 kb on - strand, within AO353_03075 at 658.094 kb on + strand, within AO353_03075 at 658.094 kb on + strand, within AO353_03075 at 658.095 kb on - strand, within AO353_03075 at 658.095 kb on - strand, within AO353_03075 at 658.095 kb on - strand, within AO353_03075 at 658.095 kb on - strand, within AO353_03075 at 658.107 kb on - strand, within AO353_03075 at 658.270 kb on + strand, within AO353_03075 at 658.271 kb on - strand, within AO353_03075 at 658.285 kb on - strand, within AO353_03075 at 658.285 kb on - strand, within AO353_03075 at 658.285 kb on - strand, within AO353_03075 at 658.395 kb on + strand at 658.396 kb on - strand at 658.396 kb on - strand at 658.412 kb on + strand at 658.447 kb on + strand at 658.447 kb on + strand at 658.448 kb on - strand at 658.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 655,201 - -0.0 655,201 - +0.8 655,201 - -0.1 655,201 - -1.0 655,201 - +0.2 655,201 - +0.8 655,201 - +0.2 655,201 - -1.2 655,201 - -0.6 655,201 - +1.2 655,201 - +0.4 655,201 - -1.0 655,201 - +0.3 655,204 + +1.5 655,204 + -1.0 655,205 - +0.9 655,255 + +0.4 655,255 + -0.5 655,255 + +0.8 655,283 + +1.0 655,284 - +0.2 655,375 + AO353_03065 0.39 -0.2 655,375 + AO353_03065 0.39 +0.3 655,375 + AO353_03065 0.39 +0.2 655,375 + AO353_03065 0.39 +0.5 655,375 + AO353_03065 0.39 +0.8 655,376 - AO353_03065 0.39 +2.8 655,376 - AO353_03065 0.39 +1.4 655,381 + AO353_03065 0.41 +0.5 655,381 + AO353_03065 0.41 +1.6 655,381 + AO353_03065 0.41 -0.9 655,381 + AO353_03065 0.41 -0.8 655,381 + AO353_03065 0.41 -3.1 655,381 + AO353_03065 0.41 +0.5 655,381 + AO353_03065 0.41 +0.4 655,381 + AO353_03065 0.41 +1.2 655,381 + AO353_03065 0.41 +0.5 655,382 - AO353_03065 0.41 +0.2 655,382 - AO353_03065 0.41 -0.6 655,382 - AO353_03065 0.41 +0.2 655,382 - AO353_03065 0.41 +0.2 655,382 - AO353_03065 0.41 +0.0 655,410 + AO353_03065 0.52 -1.9 655,411 - AO353_03065 0.52 +0.0 655,411 - AO353_03065 0.52 -0.8 655,411 - AO353_03065 0.52 -2.9 655,427 + AO353_03065 0.58 -0.8 655,427 + AO353_03065 0.58 -0.3 655,427 + AO353_03065 0.58 +2.4 655,448 + AO353_03065 0.66 -1.2 655,448 + AO353_03065 0.66 -0.7 655,448 + AO353_03065 0.66 +0.5 655,449 - AO353_03065 0.67 -2.7 655,465 + AO353_03065 0.73 +0.5 655,465 + AO353_03065 0.73 +1.5 655,465 + AO353_03065 0.73 -1.4 655,465 + AO353_03065 0.73 -0.8 655,465 + AO353_03065 0.73 -0.8 655,465 + AO353_03065 0.73 +1.5 655,465 + AO353_03065 0.73 -0.8 655,465 + AO353_03065 0.73 +0.0 655,466 - AO353_03065 0.73 +0.6 655,466 - AO353_03065 0.73 +0.6 655,491 + AO353_03065 0.83 +1.4 655,492 - AO353_03065 0.83 +0.7 655,492 - AO353_03065 0.83 -1.2 655,501 + AO353_03065 0.86 -0.2 655,508 + AO353_03065 0.89 +0.4 655,508 + AO353_03065 0.89 -0.8 655,509 - AO353_03065 0.89 +0.5 655,639 + +1.2 655,639 + +0.2 655,639 + -0.8 655,640 - -0.5 655,640 - -0.0 655,640 - +0.1 655,640 - +0.8 655,640 - -1.2 655,640 - +1.4 655,640 - -0.2 655,640 - +0.2 655,640 - +0.8 655,640 - +0.8 655,640 - +0.0 655,640 - -1.2 655,640 - +1.8 655,645 + +0.6 655,645 + +0.8 655,645 + -0.2 655,645 + -1.0 655,646 - +0.8 655,646 - +0.6 655,646 - +1.7 655,646 - -0.8 655,650 + -0.1 655,650 + +0.4 655,651 - -2.5 655,863 - +2.0 655,863 - +1.4 655,945 + +1.0 655,945 + +1.4 655,945 + -1.5 655,945 + -0.8 655,945 + -0.4 655,947 + +1.7 655,947 + +1.1 655,958 + +3.1 655,958 + -0.6 655,982 + +0.0 656,029 + +1.2 656,061 + -0.8 656,086 + -0.2 656,086 + +0.7 656,086 + +0.3 656,086 + -1.5 657,480 + +1.4 657,480 + +0.5 657,480 + -1.2 657,480 + -1.0 657,480 + -1.5 657,481 - -2.1 657,484 + +0.2 657,485 - -2.4 657,535 - -2.2 657,535 - -0.8 657,554 + -0.7 657,554 + -1.3 657,554 + +1.3 657,555 - +0.2 657,555 - -0.2 657,555 - -0.5 657,555 - +0.1 657,555 - +0.5 657,555 - -0.2 657,555 - -1.1 657,561 + +0.0 657,562 - -1.8 657,562 - +1.3 657,562 - -1.7 657,570 + +0.7 657,570 + +0.6 657,600 + -0.8 657,600 + +0.4 657,609 + +0.1 657,609 + +1.1 657,609 + -0.3 657,609 + +2.8 657,609 + +0.8 657,609 + +0.8 657,610 - -0.2 657,629 + -1.0 657,629 + +0.8 657,645 + -1.1 657,645 + +0.4 657,645 + +1.0 657,645 + -1.2 657,646 - +1.2 657,646 - +0.2 657,720 + -0.2 657,720 + -0.4 657,720 + -0.5 657,720 + +1.8 657,720 + +1.0 657,721 - +1.2 657,738 + -1.2 657,739 - -0.8 657,739 - -0.4 657,739 - -1.0 657,749 + +1.8 657,749 + -1.5 657,749 + -0.1 657,749 + -0.8 657,750 - +0.5 657,750 - -2.2 657,750 - -0.8 657,778 + +0.1 657,778 + -0.2 657,778 + +1.4 657,778 + +0.6 657,778 + -0.3 657,779 - -1.2 657,779 - -0.7 657,779 - +1.1 657,779 - -0.2 657,779 - +1.0 657,779 - -0.2 657,779 - +0.5 657,779 - -0.8 657,779 - -1.4 657,779 - -0.5 657,779 - +0.2 657,782 + -0.1 657,782 + +1.4 657,782 + +1.0 657,782 + -2.1 657,782 + -0.2 657,782 + -0.3 657,782 + +1.1 657,783 - +0.7 657,783 - -0.8 657,783 - +1.6 657,783 - -0.2 657,783 - -2.2 657,783 - +0.8 657,783 - +0.1 657,796 + +0.1 657,797 - -0.8 657,797 - +0.5 657,813 + +2.1 657,814 - +0.6 657,814 - -0.9 657,846 + -2.5 657,847 - -0.2 657,847 - +0.5 657,929 + AO353_03075 0.24 +1.0 657,929 + AO353_03075 0.24 +0.8 657,929 + AO353_03075 0.24 +0.6 657,930 - AO353_03075 0.24 +1.3 657,930 - AO353_03075 0.24 +1.5 657,930 - AO353_03075 0.24 +0.7 657,930 - AO353_03075 0.24 +0.3 657,962 + AO353_03075 0.30 +1.1 657,962 + AO353_03075 0.30 -0.9 657,962 + AO353_03075 0.30 -0.2 657,962 + AO353_03075 0.30 +0.3 657,963 - AO353_03075 0.30 +1.2 657,963 - AO353_03075 0.30 -0.1 657,963 - AO353_03075 0.30 -0.5 657,963 - AO353_03075 0.30 +1.0 657,963 - AO353_03075 0.30 -0.2 658,073 + AO353_03075 0.50 +0.8 658,073 + AO353_03075 0.50 -0.5 658,073 + AO353_03075 0.50 +0.2 658,073 + AO353_03075 0.50 -2.2 658,073 + AO353_03075 0.50 +0.6 658,073 + AO353_03075 0.50 +0.4 658,073 + AO353_03075 0.50 +0.8 658,073 + AO353_03075 0.50 +0.1 658,073 + AO353_03075 0.50 +0.0 658,073 + AO353_03075 0.50 +1.1 658,073 + AO353_03075 0.50 +1.5 658,074 - AO353_03075 0.50 -0.9 658,074 - AO353_03075 0.50 +1.8 658,074 - AO353_03075 0.50 +0.1 658,074 - AO353_03075 0.50 +1.5 658,074 - AO353_03075 0.50 -0.8 658,074 - AO353_03075 0.50 +0.1 658,074 - AO353_03075 0.50 -0.5 658,074 - AO353_03075 0.50 -0.6 658,074 - AO353_03075 0.50 -0.9 658,074 - AO353_03075 0.50 -0.2 658,088 + AO353_03075 0.53 +2.0 658,088 + AO353_03075 0.53 -1.3 658,088 + AO353_03075 0.53 -0.2 658,088 + AO353_03075 0.53 -0.8 658,088 + AO353_03075 0.53 -1.5 658,089 - AO353_03075 0.53 +0.5 658,089 - AO353_03075 0.53 -0.8 658,089 - AO353_03075 0.53 -0.8 658,089 - AO353_03075 0.53 -0.1 658,094 + AO353_03075 0.54 -0.8 658,094 + AO353_03075 0.54 +0.6 658,095 - AO353_03075 0.54 +1.2 658,095 - AO353_03075 0.54 -1.2 658,095 - AO353_03075 0.54 -1.5 658,095 - AO353_03075 0.54 +0.8 658,107 - AO353_03075 0.56 -0.2 658,270 + AO353_03075 0.86 +0.8 658,271 - AO353_03075 0.86 +1.1 658,285 - AO353_03075 0.89 +0.2 658,285 - AO353_03075 0.89 -0.5 658,285 - AO353_03075 0.89 -0.3 658,395 + -1.7 658,396 - +0.0 658,396 - +0.1 658,412 + +1.2 658,447 + -0.0 658,447 + -0.8 658,448 - -0.6 658,448 - +0.1
Or see this region's nucleotide sequence