Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02835 and AO353_02840 are separated by 730 nucleotides AO353_02840 and AO353_02845 are separated by 172 nucleotides
AO353_02835: AO353_02835 - chemotaxis protein CheY, at 601,437 to 602,162
_02835
AO353_02840: AO353_02840 - ribonucleotide-diphosphate reductase subunit alpha, at 602,893 to 605,787
_02840
AO353_02845: AO353_02845 - flagellar biosynthesis protein FlgE, at 605,960 to 607,291
_02845
Position (kb) 602
603
604
605
606 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 601.939 kb on + strand, within AO353_02835 at 601.939 kb on + strand, within AO353_02835 at 601.940 kb on - strand, within AO353_02835 at 601.940 kb on - strand, within AO353_02835 at 602.027 kb on + strand, within AO353_02835 at 602.093 kb on - strand at 602.093 kb on - strand at 602.093 kb on - strand at 602.139 kb on + strand at 602.139 kb on + strand at 602.140 kb on - strand at 602.185 kb on + strand at 602.185 kb on + strand at 602.185 kb on + strand at 602.185 kb on + strand at 602.185 kb on + strand at 602.186 kb on - strand at 602.188 kb on + strand at 602.188 kb on + strand at 602.189 kb on - strand at 602.189 kb on - strand at 602.214 kb on + strand at 602.215 kb on - strand at 602.215 kb on - strand at 602.230 kb on + strand at 602.230 kb on + strand at 602.231 kb on - strand at 602.231 kb on - strand at 602.231 kb on - strand at 602.240 kb on + strand at 602.240 kb on + strand at 602.241 kb on - strand at 602.257 kb on + strand at 602.257 kb on + strand at 602.257 kb on + strand at 602.257 kb on + strand at 602.257 kb on + strand at 602.258 kb on - strand at 602.258 kb on - strand at 602.258 kb on - strand at 602.258 kb on - strand at 602.322 kb on - strand at 602.322 kb on - strand at 602.354 kb on + strand at 602.409 kb on + strand at 602.431 kb on + strand at 602.441 kb on - strand at 602.441 kb on - strand at 602.462 kb on + strand at 602.463 kb on - strand at 602.465 kb on + strand at 602.465 kb on + strand at 602.465 kb on + strand at 602.465 kb on + strand at 602.493 kb on + strand at 602.493 kb on + strand at 602.522 kb on + strand at 602.522 kb on + strand at 602.522 kb on + strand at 602.528 kb on + strand at 602.528 kb on + strand at 602.610 kb on + strand at 602.696 kb on + strand at 602.696 kb on + strand at 602.801 kb on + strand at 602.823 kb on + strand at 602.823 kb on + strand at 605.785 kb on + strand at 605.816 kb on + strand at 605.816 kb on + strand at 605.817 kb on - strand at 605.869 kb on - strand at 605.869 kb on - strand at 605.939 kb on - strand at 605.944 kb on + strand at 606.027 kb on + strand at 606.027 kb on + strand at 606.027 kb on + strand at 606.316 kb on + strand, within AO353_02845 at 606.321 kb on + strand, within AO353_02845 at 606.321 kb on + strand, within AO353_02845 at 606.322 kb on - strand, within AO353_02845 at 606.340 kb on + strand, within AO353_02845 at 606.340 kb on + strand, within AO353_02845 at 606.562 kb on + strand, within AO353_02845 at 606.563 kb on - strand, within AO353_02845 at 606.563 kb on - strand, within AO353_02845 at 606.630 kb on + strand, within AO353_02845 at 606.630 kb on + strand, within AO353_02845 at 606.630 kb on + strand, within AO353_02845 at 606.631 kb on - strand, within AO353_02845 at 606.631 kb on - strand, within AO353_02845 at 606.631 kb on - strand, within AO353_02845 at 606.631 kb on - strand, within AO353_02845 at 606.631 kb on - strand, within AO353_02845 at 606.631 kb on - strand, within AO353_02845 at 606.631 kb on - strand, within AO353_02845 at 606.631 kb on - strand, within AO353_02845 at 606.631 kb on - strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.666 kb on + strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.667 kb on - strand, within AO353_02845 at 606.702 kb on + strand at 606.702 kb on + strand, within AO353_02845 at 606.702 kb on + strand, within AO353_02845 at 606.702 kb on + strand, within AO353_02845 at 606.702 kb on + strand, within AO353_02845 at 606.702 kb on + strand, within AO353_02845 at 606.702 kb on + strand, within AO353_02845 at 606.702 kb on + strand, within AO353_02845 at 606.703 kb on - strand, within AO353_02845 at 606.703 kb on - strand, within AO353_02845 at 606.703 kb on - strand, within AO353_02845 at 606.703 kb on - strand, within AO353_02845 at 606.703 kb on - strand, within AO353_02845 at 606.703 kb on - strand, within AO353_02845 at 606.703 kb on - strand, within AO353_02845 at 606.703 kb on - strand, within AO353_02845 at 606.713 kb on - strand, within AO353_02845 at 606.729 kb on + strand, within AO353_02845 at 606.729 kb on + strand, within AO353_02845 at 606.729 kb on + strand, within AO353_02845 at 606.730 kb on - strand, within AO353_02845 at 606.730 kb on - strand, within AO353_02845
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 601,939 + AO353_02835 0.69 +2.4 601,939 + AO353_02835 0.69 +2.1 601,940 - AO353_02835 0.69 -0.8 601,940 - AO353_02835 0.69 +0.5 602,027 + AO353_02835 0.81 +1.0 602,093 - -1.2 602,093 - +0.1 602,093 - +0.0 602,139 + +1.2 602,139 + -0.7 602,140 - +0.8 602,185 + +0.5 602,185 + -0.1 602,185 + -0.7 602,185 + +2.4 602,185 + -0.6 602,186 - +0.8 602,188 + +1.2 602,188 + -0.4 602,189 - -0.5 602,189 - -0.2 602,214 + +0.1 602,215 - -0.2 602,215 - +0.5 602,230 + +1.6 602,230 + -0.2 602,231 - +0.8 602,231 - +0.8 602,231 - -0.7 602,240 + +0.6 602,240 + +1.2 602,241 - +0.6 602,257 + -1.2 602,257 + -0.4 602,257 + +0.4 602,257 + +0.8 602,257 + +0.5 602,258 - +0.1 602,258 - +0.3 602,258 - -0.1 602,258 - -1.0 602,322 - +0.8 602,322 - +1.0 602,354 + -1.2 602,409 + +2.3 602,431 + +0.1 602,441 - -0.7 602,441 - -0.5 602,462 + +0.2 602,463 - +1.5 602,465 + +1.2 602,465 + -0.2 602,465 + +1.0 602,465 + +0.5 602,493 + +1.5 602,493 + -0.6 602,522 + +1.1 602,522 + -0.2 602,522 + -0.5 602,528 + -0.5 602,528 + -0.2 602,610 + -2.0 602,696 + +0.3 602,696 + +2.2 602,801 + -1.0 602,823 + +0.2 602,823 + -1.4 605,785 + -1.5 605,816 + -1.1 605,816 + +0.4 605,817 - -0.1 605,869 - -0.2 605,869 - +0.2 605,939 - +0.3 605,944 + -2.2 606,027 + -0.2 606,027 + +0.1 606,027 + +0.6 606,316 + AO353_02845 0.27 +0.8 606,321 + AO353_02845 0.27 -0.3 606,321 + AO353_02845 0.27 +1.4 606,322 - AO353_02845 0.27 -0.2 606,340 + AO353_02845 0.29 +0.6 606,340 + AO353_02845 0.29 -1.1 606,562 + AO353_02845 0.45 -0.2 606,563 - AO353_02845 0.45 +2.4 606,563 - AO353_02845 0.45 -0.2 606,630 + AO353_02845 0.50 +0.5 606,630 + AO353_02845 0.50 +1.8 606,630 + AO353_02845 0.50 +0.8 606,631 - AO353_02845 0.50 +0.2 606,631 - AO353_02845 0.50 -0.8 606,631 - AO353_02845 0.50 +0.4 606,631 - AO353_02845 0.50 +0.8 606,631 - AO353_02845 0.50 -0.0 606,631 - AO353_02845 0.50 +0.5 606,631 - AO353_02845 0.50 +0.8 606,631 - AO353_02845 0.50 -0.5 606,631 - AO353_02845 0.50 -2.4 606,666 + AO353_02845 0.53 +0.0 606,666 + AO353_02845 0.53 +0.1 606,666 + AO353_02845 0.53 +0.8 606,666 + AO353_02845 0.53 +1.2 606,666 + AO353_02845 0.53 +0.8 606,666 + AO353_02845 0.53 -0.2 606,666 + AO353_02845 0.53 -2.0 606,666 + AO353_02845 0.53 -0.2 606,666 + AO353_02845 0.53 +0.2 606,666 + AO353_02845 0.53 -2.4 606,666 + AO353_02845 0.53 +0.4 606,666 + AO353_02845 0.53 +1.0 606,666 + AO353_02845 0.53 +1.1 606,666 + AO353_02845 0.53 +2.0 606,666 + AO353_02845 0.53 +0.2 606,666 + AO353_02845 0.53 -1.8 606,666 + AO353_02845 0.53 +0.8 606,666 + AO353_02845 0.53 +0.8 606,666 + AO353_02845 0.53 +0.3 606,666 + AO353_02845 0.53 +0.6 606,666 + AO353_02845 0.53 +1.5 606,666 + AO353_02845 0.53 +1.8 606,666 + AO353_02845 0.53 -0.4 606,666 + AO353_02845 0.53 +0.8 606,666 + AO353_02845 0.53 -0.4 606,666 + AO353_02845 0.53 +0.1 606,667 - AO353_02845 0.53 +0.6 606,667 - AO353_02845 0.53 +1.2 606,667 - AO353_02845 0.53 +0.7 606,667 - AO353_02845 0.53 +2.8 606,667 - AO353_02845 0.53 +2.5 606,667 - AO353_02845 0.53 +2.6 606,667 - AO353_02845 0.53 -0.8 606,667 - AO353_02845 0.53 -0.3 606,667 - AO353_02845 0.53 +0.2 606,667 - AO353_02845 0.53 +0.6 606,667 - AO353_02845 0.53 -0.4 606,667 - AO353_02845 0.53 +0.3 606,667 - AO353_02845 0.53 +1.4 606,667 - AO353_02845 0.53 +0.6 606,667 - AO353_02845 0.53 -0.6 606,667 - AO353_02845 0.53 -0.2 606,667 - AO353_02845 0.53 -1.8 606,667 - AO353_02845 0.53 +0.6 606,667 - AO353_02845 0.53 +0.5 606,667 - AO353_02845 0.53 -0.9 606,667 - AO353_02845 0.53 -1.8 606,667 - AO353_02845 0.53 -1.2 606,667 - AO353_02845 0.53 +0.4 606,667 - AO353_02845 0.53 -1.8 606,667 - AO353_02845 0.53 +0.5 606,667 - AO353_02845 0.53 +2.8 606,667 - AO353_02845 0.53 -0.8 606,667 - AO353_02845 0.53 +0.4 606,667 - AO353_02845 0.53 +1.5 606,667 - AO353_02845 0.53 -2.7 606,702 + +1.4 606,702 + AO353_02845 0.56 +1.1 606,702 + AO353_02845 0.56 -0.7 606,702 + AO353_02845 0.56 -0.3 606,702 + AO353_02845 0.56 -0.6 606,702 + AO353_02845 0.56 -2.8 606,702 + AO353_02845 0.56 +1.5 606,702 + AO353_02845 0.56 -0.7 606,703 - AO353_02845 0.56 -0.8 606,703 - AO353_02845 0.56 -0.0 606,703 - AO353_02845 0.56 +0.8 606,703 - AO353_02845 0.56 -0.7 606,703 - AO353_02845 0.56 -0.4 606,703 - AO353_02845 0.56 -0.2 606,703 - AO353_02845 0.56 +0.3 606,703 - AO353_02845 0.56 +1.5 606,713 - AO353_02845 0.57 +2.0 606,729 + AO353_02845 0.58 -0.2 606,729 + AO353_02845 0.58 +0.1 606,729 + AO353_02845 0.58 -1.8 606,730 - AO353_02845 0.58 -0.0 606,730 - AO353_02845 0.58 -1.6
Or see this region's nucleotide sequence