Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02675 and AO353_02680 are separated by 298 nucleotides AO353_02680 and AO353_02685 are separated by 11 nucleotides AO353_02685 and AO353_02690 are separated by 8 nucleotides
AO353_02675: AO353_02675 - hypothetical protein, at 568,637 to 569,773
_02675
AO353_02680: AO353_02680 - phosphoribosylaminoimidazole synthetase, at 570,072 to 571,130
_02680
AO353_02685: AO353_02685 - phosphoribosylglycinamide formyltransferase, at 571,142 to 571,792
_02685
AO353_02690: AO353_02690 - dehydrogenase, at 571,801 to 572,514
_02690
Position (kb) 570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 569.118 kb on + strand, within AO353_02675 at 569.604 kb on + strand, within AO353_02675 at 569.669 kb on + strand at 569.669 kb on + strand at 569.669 kb on + strand at 569.670 kb on - strand at 569.674 kb on + strand at 569.674 kb on + strand at 569.675 kb on - strand at 569.675 kb on - strand at 569.807 kb on - strand at 569.827 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.830 kb on - strand at 569.830 kb on - strand at 569.830 kb on - strand at 569.830 kb on - strand at 569.830 kb on - strand at 569.830 kb on - strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.881 kb on + strand at 569.890 kb on - strand at 569.890 kb on - strand at 569.890 kb on - strand at 570.011 kb on + strand at 570.096 kb on + strand at 571.496 kb on + strand, within AO353_02685 at 571.497 kb on - strand, within AO353_02685 at 571.497 kb on - strand, within AO353_02685 at 571.497 kb on - strand, within AO353_02685 at 571.497 kb on - strand, within AO353_02685 at 571.497 kb on - strand, within AO353_02685 at 571.507 kb on - strand, within AO353_02685 at 571.611 kb on + strand, within AO353_02685 at 571.612 kb on - strand, within AO353_02685 at 571.615 kb on - strand, within AO353_02685 at 571.683 kb on - strand, within AO353_02685 at 571.759 kb on - strand at 571.790 kb on + strand at 571.790 kb on + strand at 571.790 kb on + strand at 571.790 kb on + strand at 571.791 kb on - strand at 571.791 kb on - strand at 571.800 kb on + strand at 571.800 kb on + strand at 571.800 kb on + strand at 571.801 kb on - strand at 571.801 kb on - strand at 571.801 kb on - strand at 571.885 kb on + strand, within AO353_02690 at 571.885 kb on + strand, within AO353_02690 at 571.885 kb on + strand, within AO353_02690 at 571.885 kb on + strand, within AO353_02690 at 571.885 kb on + strand, within AO353_02690 at 571.885 kb on + strand, within AO353_02690 at 571.886 kb on - strand, within AO353_02690 at 572.053 kb on + strand, within AO353_02690
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 569,118 + AO353_02675 0.42 -0.4 569,604 + AO353_02675 0.85 +0.5 569,669 + -1.1 569,669 + +0.5 569,669 + +1.5 569,670 - -0.5 569,674 + -2.2 569,674 + -0.0 569,675 - -0.9 569,675 - +0.1 569,807 - -0.2 569,827 + -1.0 569,829 + -0.4 569,829 + +1.4 569,829 + +0.1 569,829 + +0.7 569,829 + +0.4 569,829 + +0.2 569,829 + -0.2 569,829 + +0.1 569,829 + -0.7 569,830 - -0.4 569,830 - -0.5 569,830 - +1.5 569,830 - -0.4 569,830 - -0.4 569,830 - +1.8 569,834 + +0.3 569,834 + +0.6 569,834 + +1.7 569,834 + -2.9 569,834 + +0.3 569,834 + -1.0 569,834 + -0.2 569,835 - -1.8 569,835 - +1.0 569,835 - +0.6 569,835 - -0.1 569,835 - +0.8 569,835 - -0.5 569,835 - +0.3 569,836 + +0.4 569,836 + +0.9 569,836 + -1.1 569,836 + +0.8 569,836 + +0.5 569,836 + +0.4 569,836 + -1.4 569,837 - -0.5 569,837 - -0.3 569,837 - +1.7 569,837 - +0.8 569,837 - -1.0 569,837 - +0.3 569,837 - +0.5 569,837 - -0.1 569,837 - +0.1 569,837 - -0.6 569,837 - -0.2 569,837 - +1.2 569,837 - +0.4 569,837 - +0.2 569,881 + +0.8 569,890 - -1.5 569,890 - -1.5 569,890 - -1.2 570,011 + -0.4 570,096 + +0.4 571,496 + AO353_02685 0.54 +1.1 571,497 - AO353_02685 0.55 -0.2 571,497 - AO353_02685 0.55 +1.4 571,497 - AO353_02685 0.55 +0.4 571,497 - AO353_02685 0.55 -2.5 571,497 - AO353_02685 0.55 -1.2 571,507 - AO353_02685 0.56 -1.5 571,611 + AO353_02685 0.72 +0.4 571,612 - AO353_02685 0.72 +0.8 571,615 - AO353_02685 0.73 +0.8 571,683 - AO353_02685 0.83 -0.2 571,759 - -0.5 571,790 + -0.8 571,790 + +0.6 571,790 + +0.1 571,790 + +0.4 571,791 - -0.0 571,791 - -0.5 571,800 + +0.0 571,800 + -2.2 571,800 + +2.2 571,801 - -1.8 571,801 - -0.2 571,801 - -1.2 571,885 + AO353_02690 0.12 +1.0 571,885 + AO353_02690 0.12 +0.8 571,885 + AO353_02690 0.12 +0.1 571,885 + AO353_02690 0.12 +1.5 571,885 + AO353_02690 0.12 -0.3 571,885 + AO353_02690 0.12 +0.2 571,886 - AO353_02690 0.12 +1.4 572,053 + AO353_02690 0.35 -0.4
Or see this region's nucleotide sequence