Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02055

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_02050 and AO353_02055 are separated by 121 nucleotidesAO353_02055 and AO353_02060 overlap by 4 nucleotides AO353_02050: AO353_02050 - 30S ribosomal protein S1, at 435,252 to 436,943 _02050 AO353_02055: AO353_02055 - cytidylate kinase, at 437,065 to 437,754 _02055 AO353_02060: AO353_02060 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 437,751 to 439,958 _02060 Position (kb) 437 438Strain fitness (log2 ratio) -1 0 1at 437.037 kb on - strandat 437.037 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
remove
437,037 - -1.7
437,037 - -0.5

Or see this region's nucleotide sequence