Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01885

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01880 and AO353_01885 are separated by 140 nucleotidesAO353_01885 and AO353_01890 are separated by 223 nucleotides AO353_01880: AO353_01880 - beta (1-6) glucans synthase, at 396,985 to 398,580 _01880 AO353_01885: AO353_01885 - hypothetical protein, at 398,721 to 399,092 _01885 AO353_01890: AO353_01890 - serine/threonine protein kinase, at 399,316 to 400,614 _01890 Position (kb) 398 399 400Strain fitness (log2 ratio) -2 -1 0 1 2at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.853 kb on - strand, within AO353_01880at 397.853 kb on - strand, within AO353_01880at 397.853 kb on - strandat 397.853 kb on - strand, within AO353_01880at 397.955 kb on + strand, within AO353_01880at 397.956 kb on - strand, within AO353_01880at 398.058 kb on + strand, within AO353_01880at 398.396 kb on - strand, within AO353_01880at 398.396 kb on - strand, within AO353_01880at 398.396 kb on - strand, within AO353_01880at 398.396 kb on - strand, within AO353_01880at 398.574 kb on + strandat 398.574 kb on + strandat 398.574 kb on + strandat 398.574 kb on + strandat 398.575 kb on - strandat 398.575 kb on - strandat 398.575 kb on - strandat 398.581 kb on + strandat 398.582 kb on - strandat 398.638 kb on + strandat 398.645 kb on + strandat 398.669 kb on + strandat 398.669 kb on + strandat 398.669 kb on + strandat 398.670 kb on - strandat 398.670 kb on - strandat 398.670 kb on - strandat 398.670 kb on - strandat 398.681 kb on - strandat 398.681 kb on - strandat 398.778 kb on + strand, within AO353_01885at 398.795 kb on + strand, within AO353_01885at 398.796 kb on - strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 399.016 kb on + strand, within AO353_01885at 399.016 kb on + strand, within AO353_01885at 399.016 kb on + strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.029 kb on - strand, within AO353_01885at 399.029 kb on - strand, within AO353_01885at 399.029 kb on - strand, within AO353_01885at 399.068 kb on + strandat 399.068 kb on + strandat 399.068 kb on + strandat 399.069 kb on - strandat 399.069 kb on - strandat 399.069 kb on - strandat 399.128 kb on - strandat 399.128 kb on - strandat 399.144 kb on + strandat 399.144 kb on + strandat 399.193 kb on + strandat 399.193 kb on + strandat 399.193 kb on + strandat 399.193 kb on + strandat 399.193 kb on + strandat 399.193 kb on + strandat 399.194 kb on - strandat 399.194 kb on - strandat 399.271 kb on + strandat 399.271 kb on + strandat 399.272 kb on - strandat 399.292 kb on + strandat 399.292 kb on + strandat 399.292 kb on + strandat 399.293 kb on - strandat 399.293 kb on - strandat 399.293 kb on - strandat 399.293 kb on - strandat 399.293 kb on - strandat 399.302 kb on + strandat 399.303 kb on - strandat 399.311 kb on + strandat 399.311 kb on + strandat 399.311 kb on + strandat 399.311 kb on + strandat 399.311 kb on + strandat 399.311 kb on + strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.403 kb on + strandat 399.403 kb on + strandat 399.403 kb on + strandat 399.403 kb on + strandat 399.404 kb on - strandat 399.505 kb on + strand, within AO353_01890at 399.505 kb on + strand, within AO353_01890at 399.505 kb on + strand, within AO353_01890at 399.505 kb on + strand, within AO353_01890at 399.506 kb on - strand, within AO353_01890at 399.577 kb on + strand, within AO353_01890at 399.577 kb on + strand, within AO353_01890at 399.578 kb on - strand, within AO353_01890at 399.578 kb on - strand, within AO353_01890at 399.578 kb on - strand, within AO353_01890at 399.657 kb on + strand, within AO353_01890at 399.665 kb on - strand, within AO353_01890at 399.679 kb on + strand, within AO353_01890at 399.679 kb on + strand, within AO353_01890at 399.680 kb on - strand, within AO353_01890at 399.680 kb on - strand, within AO353_01890at 399.680 kb on - strand, within AO353_01890at 399.680 kb on - strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.797 kb on - strand, within AO353_01890at 399.797 kb on - strand, within AO353_01890at 399.850 kb on + strand, within AO353_01890at 399.850 kb on + strand, within AO353_01890at 399.851 kb on - strand, within AO353_01890at 399.853 kb on + strand, within AO353_01890at 399.853 kb on + strand, within AO353_01890at 399.853 kb on + strand, within AO353_01890at 399.853 kb on + strand, within AO353_01890at 399.854 kb on - strand, within AO353_01890at 399.854 kb on - strand, within AO353_01890at 399.854 kb on - strand, within AO353_01890at 399.854 kb on - strand, within AO353_01890at 399.970 kb on + strand, within AO353_01890at 399.970 kb on + strand, within AO353_01890at 399.970 kb on + strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 400.001 kb on + strand, within AO353_01890at 400.001 kb on + strand, within AO353_01890at 400.002 kb on - strand, within AO353_01890at 400.002 kb on - strand, within AO353_01890at 400.002 kb on - strand, within AO353_01890at 400.002 kb on - strand, within AO353_01890at 400.042 kb on + strand, within AO353_01890at 400.042 kb on + strand, within AO353_01890at 400.042 kb on + strand, within AO353_01890at 400.042 kb on + strand, within AO353_01890at 400.042 kb on + strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.073 kb on - strand, within AO353_01890at 400.073 kb on - strand, within AO353_01890at 400.073 kb on - strand, within AO353_01890at 400.091 kb on - strand, within AO353_01890at 400.091 kb on - strand, within AO353_01890

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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397,852 + AO353_01880 0.54 -0.1
397,852 + AO353_01880 0.54 -0.4
397,852 + AO353_01880 0.54 -0.4
397,852 + AO353_01880 0.54 -1.9
397,852 + AO353_01880 0.54 -2.0
397,852 + AO353_01880 0.54 -0.7
397,852 + AO353_01880 0.54 +0.0
397,852 + AO353_01880 0.54 -0.6
397,853 - AO353_01880 0.54 +0.3
397,853 - AO353_01880 0.54 +0.2
397,853 - +0.7
397,853 - AO353_01880 0.54 +0.4
397,955 + AO353_01880 0.61 +0.2
397,956 - AO353_01880 0.61 -0.6
398,058 + AO353_01880 0.67 +0.0
398,396 - AO353_01880 0.88 -0.8
398,396 - AO353_01880 0.88 -0.5
398,396 - AO353_01880 0.88 +0.1
398,396 - AO353_01880 0.88 +0.1
398,574 + -0.5
398,574 + -0.0
398,574 + +0.2
398,574 + -1.0
398,575 - +1.6
398,575 - +0.0
398,575 - -0.3
398,581 + -0.8
398,582 - +1.7
398,638 + +0.9
398,645 + +1.7
398,669 + +0.7
398,669 + -0.4
398,669 + -0.3
398,670 - +1.3
398,670 - -1.8
398,670 - -1.3
398,670 - +0.5
398,681 - -1.1
398,681 - -0.5
398,778 + AO353_01885 0.15 -0.8
398,795 + AO353_01885 0.20 +0.3
398,796 - AO353_01885 0.20 -0.8
398,797 + AO353_01885 0.20 -1.3
398,797 + AO353_01885 0.20 -0.8
398,797 + AO353_01885 0.20 -2.3
398,797 + AO353_01885 0.20 +0.2
398,797 + AO353_01885 0.20 +0.3
398,797 + AO353_01885 0.20 -1.6
398,797 + AO353_01885 0.20 -0.8
398,797 + AO353_01885 0.20 +0.2
398,797 + AO353_01885 0.20 -0.6
398,797 + AO353_01885 0.20 -2.7
398,797 + AO353_01885 0.20 +0.5
398,798 - AO353_01885 0.21 -0.7
398,798 - AO353_01885 0.21 -0.6
398,798 - AO353_01885 0.21 -1.4
398,798 - AO353_01885 0.21 -1.3
398,798 - AO353_01885 0.21 +0.2
398,798 - AO353_01885 0.21 -0.8
398,798 - AO353_01885 0.21 -0.5
398,798 - AO353_01885 0.21 -2.1
398,798 - AO353_01885 0.21 -0.3
398,798 - AO353_01885 0.21 -0.6
398,798 - AO353_01885 0.21 -1.3
398,798 - AO353_01885 0.21 -0.6
399,016 + AO353_01885 0.79 +1.7
399,016 + AO353_01885 0.79 +0.3
399,016 + AO353_01885 0.79 -0.3
399,017 - AO353_01885 0.80 -1.4
399,017 - AO353_01885 0.80 +1.3
399,017 - AO353_01885 0.80 -0.7
399,017 - AO353_01885 0.80 -0.3
399,017 - AO353_01885 0.80 -1.4
399,017 - AO353_01885 0.80 -1.8
399,017 - AO353_01885 0.80 -0.8
399,029 - AO353_01885 0.83 -0.8
399,029 - AO353_01885 0.83 -0.3
399,029 - AO353_01885 0.83 -0.6
399,068 + +0.2
399,068 + +0.3
399,068 + +0.1
399,069 - +0.6
399,069 - -0.6
399,069 - +0.8
399,128 - +0.1
399,128 - +1.3
399,144 + +0.3
399,144 + -0.1
399,193 + -0.8
399,193 + +0.5
399,193 + -0.8
399,193 + -0.3
399,193 + -0.6
399,193 + +0.5
399,194 - -0.1
399,194 - -0.3
399,271 + -0.3
399,271 + -0.1
399,272 - +0.3
399,292 + +1.3
399,292 + -0.3
399,292 + -0.7
399,293 - -0.1
399,293 - -1.4
399,293 - -1.3
399,293 - +1.9
399,293 - +0.1
399,302 + +0.7
399,303 - -0.5
399,311 + +0.7
399,311 + -0.3
399,311 + +0.2
399,311 + -1.3
399,311 + -0.0
399,311 + +1.5
399,312 - +1.0
399,312 - +0.3
399,312 - +0.2
399,312 - +2.3
399,312 - -2.1
399,312 - +0.3
399,312 - +0.7
399,312 - +0.5
399,403 + +1.1
399,403 + -0.6
399,403 + +0.6
399,403 + -0.5
399,404 - -0.2
399,505 + AO353_01890 0.15 +0.7
399,505 + AO353_01890 0.15 -0.8
399,505 + AO353_01890 0.15 -0.3
399,505 + AO353_01890 0.15 +0.2
399,506 - AO353_01890 0.15 -1.4
399,577 + AO353_01890 0.20 -0.7
399,577 + AO353_01890 0.20 -0.6
399,578 - AO353_01890 0.20 +1.0
399,578 - AO353_01890 0.20 +1.3
399,578 - AO353_01890 0.20 +0.3
399,657 + AO353_01890 0.26 +0.8
399,665 - AO353_01890 0.27 +0.4
399,679 + AO353_01890 0.28 +0.5
399,679 + AO353_01890 0.28 +1.4
399,680 - AO353_01890 0.28 +0.2
399,680 - AO353_01890 0.28 -0.1
399,680 - AO353_01890 0.28 -2.4
399,680 - AO353_01890 0.28 +2.6
399,682 + AO353_01890 0.28 -0.8
399,682 + AO353_01890 0.28 -0.4
399,682 + AO353_01890 0.28 +1.0
399,682 + AO353_01890 0.28 -0.3
399,682 + AO353_01890 0.28 +1.7
399,682 + AO353_01890 0.28 +0.1
399,683 - AO353_01890 0.28 +1.2
399,683 - AO353_01890 0.28 +0.7
399,683 - AO353_01890 0.28 +0.0
399,683 - AO353_01890 0.28 -0.3
399,683 - AO353_01890 0.28 -0.3
399,683 - AO353_01890 0.28 -0.3
399,796 + AO353_01890 0.37 -0.8
399,796 + AO353_01890 0.37 +0.6
399,796 + AO353_01890 0.37 -0.1
399,796 + AO353_01890 0.37 +0.2
399,796 + AO353_01890 0.37 -0.3
399,796 + AO353_01890 0.37 -0.5
399,797 - AO353_01890 0.37 +0.7
399,797 - AO353_01890 0.37 -0.7
399,850 + AO353_01890 0.41 -0.1
399,850 + AO353_01890 0.41 -1.9
399,851 - AO353_01890 0.41 +0.7
399,853 + AO353_01890 0.41 +0.7
399,853 + AO353_01890 0.41 +1.2
399,853 + AO353_01890 0.41 +0.7
399,853 + AO353_01890 0.41 -1.6
399,854 - AO353_01890 0.41 +0.7
399,854 - AO353_01890 0.41 +0.6
399,854 - AO353_01890 0.41 +2.7
399,854 - AO353_01890 0.41 +0.4
399,970 + AO353_01890 0.50 +0.7
399,970 + AO353_01890 0.50 +1.2
399,970 + AO353_01890 0.50 +1.2
399,971 - AO353_01890 0.50 -0.1
399,971 - AO353_01890 0.50 -0.8
399,971 - AO353_01890 0.50 -1.8
399,971 - AO353_01890 0.50 +0.2
399,971 - AO353_01890 0.50 +0.2
399,971 - AO353_01890 0.50 -1.7
399,971 - AO353_01890 0.50 -0.1
400,001 + AO353_01890 0.53 +0.3
400,001 + AO353_01890 0.53 -0.6
400,002 - AO353_01890 0.53 -1.1
400,002 - AO353_01890 0.53 +0.3
400,002 - AO353_01890 0.53 -1.3
400,002 - AO353_01890 0.53 +0.6
400,042 + AO353_01890 0.56 +0.0
400,042 + AO353_01890 0.56 +0.7
400,042 + AO353_01890 0.56 -0.6
400,042 + AO353_01890 0.56 +0.7
400,042 + AO353_01890 0.56 -0.0
400,043 - AO353_01890 0.56 +1.0
400,043 - AO353_01890 0.56 -0.3
400,043 - AO353_01890 0.56 -0.1
400,043 - AO353_01890 0.56 +2.3
400,043 - AO353_01890 0.56 +0.3
400,043 - AO353_01890 0.56 +0.1
400,043 - AO353_01890 0.56 -0.0
400,073 - AO353_01890 0.58 +1.1
400,073 - AO353_01890 0.58 -1.3
400,073 - AO353_01890 0.58 +0.0
400,091 - AO353_01890 0.60 +1.3
400,091 - AO353_01890 0.60 +0.4

Or see this region's nucleotide sequence