Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01665 and AO353_01670 are separated by 120 nucleotides AO353_01670 and AO353_01675 are separated by 270 nucleotides
AO353_01665: AO353_01665 - NADP-dependent oxidoreductase, at 350,677 to 351,681
_01665
AO353_01670: AO353_01670 - orotidine 5'-phosphate decarboxylase, at 351,802 to 352,536
_01670
AO353_01675: AO353_01675 - transcriptional regulator, at 352,807 to 353,571
_01675
Position (kb) 351
352
353 Strain fitness (log2 ratio) -2
-1
0
1
2 at 350.809 kb on + strand, within AO353_01665 at 350.809 kb on + strand, within AO353_01665 at 350.809 kb on + strand, within AO353_01665 at 350.809 kb on + strand, within AO353_01665 at 350.809 kb on + strand, within AO353_01665 at 350.809 kb on + strand, within AO353_01665 at 350.809 kb on + strand, within AO353_01665 at 350.810 kb on - strand, within AO353_01665 at 350.810 kb on - strand, within AO353_01665 at 350.810 kb on - strand, within AO353_01665 at 350.860 kb on + strand, within AO353_01665 at 350.860 kb on + strand, within AO353_01665 at 350.860 kb on + strand, within AO353_01665 at 350.860 kb on + strand, within AO353_01665 at 350.860 kb on + strand, within AO353_01665 at 350.861 kb on - strand, within AO353_01665 at 350.861 kb on - strand, within AO353_01665 at 350.861 kb on - strand, within AO353_01665 at 350.861 kb on - strand, within AO353_01665 at 350.953 kb on + strand, within AO353_01665 at 350.983 kb on + strand, within AO353_01665 at 350.983 kb on + strand, within AO353_01665 at 350.984 kb on - strand, within AO353_01665 at 350.984 kb on - strand, within AO353_01665 at 350.984 kb on - strand, within AO353_01665 at 350.984 kb on - strand, within AO353_01665 at 350.984 kb on - strand, within AO353_01665 at 350.984 kb on - strand, within AO353_01665 at 350.984 kb on - strand, within AO353_01665 at 351.010 kb on + strand, within AO353_01665 at 351.010 kb on + strand, within AO353_01665 at 351.010 kb on + strand, within AO353_01665 at 351.011 kb on - strand, within AO353_01665 at 351.011 kb on - strand, within AO353_01665 at 351.011 kb on - strand, within AO353_01665 at 351.011 kb on - strand, within AO353_01665 at 351.011 kb on - strand, within AO353_01665 at 351.013 kb on - strand, within AO353_01665 at 351.013 kb on - strand, within AO353_01665 at 351.046 kb on + strand, within AO353_01665 at 351.046 kb on + strand, within AO353_01665 at 351.046 kb on + strand, within AO353_01665 at 351.083 kb on - strand, within AO353_01665 at 351.083 kb on - strand, within AO353_01665 at 351.083 kb on - strand, within AO353_01665 at 351.083 kb on - strand, within AO353_01665 at 351.274 kb on + strand, within AO353_01665 at 351.274 kb on + strand, within AO353_01665 at 351.275 kb on - strand, within AO353_01665 at 351.275 kb on - strand, within AO353_01665 at 351.275 kb on - strand, within AO353_01665 at 351.326 kb on + strand, within AO353_01665 at 351.326 kb on + strand, within AO353_01665 at 351.326 kb on + strand, within AO353_01665 at 351.327 kb on - strand, within AO353_01665 at 351.327 kb on - strand, within AO353_01665 at 351.334 kb on + strand, within AO353_01665 at 351.334 kb on + strand, within AO353_01665 at 351.335 kb on - strand, within AO353_01665 at 351.335 kb on - strand, within AO353_01665 at 351.335 kb on - strand, within AO353_01665 at 351.357 kb on + strand, within AO353_01665 at 351.427 kb on + strand, within AO353_01665 at 351.427 kb on + strand, within AO353_01665 at 351.427 kb on + strand, within AO353_01665 at 351.427 kb on + strand, within AO353_01665 at 351.428 kb on - strand, within AO353_01665 at 351.428 kb on - strand, within AO353_01665 at 351.428 kb on - strand, within AO353_01665 at 351.463 kb on + strand, within AO353_01665 at 351.463 kb on + strand, within AO353_01665 at 351.463 kb on + strand, within AO353_01665 at 351.463 kb on + strand, within AO353_01665 at 351.463 kb on + strand, within AO353_01665 at 351.463 kb on + strand, within AO353_01665 at 351.463 kb on + strand, within AO353_01665 at 351.463 kb on + strand, within AO353_01665 at 351.463 kb on + strand, within AO353_01665 at 351.464 kb on - strand, within AO353_01665 at 351.464 kb on - strand, within AO353_01665 at 351.464 kb on - strand, within AO353_01665 at 351.464 kb on - strand, within AO353_01665 at 351.464 kb on - strand, within AO353_01665 at 351.464 kb on - strand, within AO353_01665 at 351.464 kb on - strand, within AO353_01665 at 351.467 kb on + strand, within AO353_01665 at 351.467 kb on + strand, within AO353_01665 at 351.468 kb on - strand, within AO353_01665 at 351.712 kb on + strand at 351.712 kb on + strand at 351.712 kb on + strand at 351.712 kb on + strand at 351.713 kb on - strand at 351.754 kb on + strand at 351.754 kb on + strand at 351.754 kb on + strand at 351.754 kb on + strand at 351.754 kb on + strand at 351.754 kb on + strand at 351.754 kb on + strand at 351.754 kb on + strand at 351.754 kb on + strand at 351.754 kb on + strand at 351.754 kb on + strand at 351.754 kb on + strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.755 kb on - strand at 351.760 kb on + strand at 351.760 kb on + strand at 351.761 kb on - strand at 351.761 kb on - strand at 351.789 kb on + strand at 352.540 kb on - strand at 352.576 kb on + strand at 352.577 kb on - strand at 352.577 kb on - strand at 352.610 kb on + strand at 352.610 kb on + strand at 352.611 kb on - strand at 352.611 kb on - strand at 352.611 kb on - strand at 352.611 kb on - strand at 352.646 kb on + strand at 352.646 kb on + strand at 352.646 kb on + strand at 352.646 kb on + strand at 352.646 kb on + strand at 352.647 kb on - strand at 352.647 kb on - strand at 352.647 kb on - strand at 352.647 kb on - strand at 352.647 kb on - strand at 352.647 kb on - strand at 352.647 kb on - strand at 352.647 kb on - strand at 352.706 kb on + strand at 352.706 kb on + strand at 352.706 kb on + strand at 352.738 kb on + strand at 352.738 kb on + strand at 352.738 kb on + strand at 352.738 kb on + strand at 352.738 kb on + strand at 352.739 kb on - strand at 352.739 kb on - strand at 352.739 kb on - strand at 352.739 kb on - strand at 352.802 kb on + strand at 352.802 kb on + strand at 352.802 kb on + strand at 352.802 kb on + strand at 352.802 kb on + strand at 352.802 kb on + strand at 352.802 kb on + strand at 352.803 kb on - strand at 352.933 kb on + strand, within AO353_01675 at 352.933 kb on + strand, within AO353_01675 at 353.011 kb on + strand, within AO353_01675 at 353.012 kb on - strand, within AO353_01675 at 353.012 kb on - strand, within AO353_01675 at 353.012 kb on - strand, within AO353_01675 at 353.012 kb on - strand, within AO353_01675 at 353.167 kb on + strand, within AO353_01675 at 353.167 kb on + strand, within AO353_01675 at 353.167 kb on + strand, within AO353_01675 at 353.167 kb on + strand, within AO353_01675 at 353.167 kb on + strand, within AO353_01675 at 353.167 kb on + strand, within AO353_01675 at 353.168 kb on - strand, within AO353_01675 at 353.168 kb on - strand, within AO353_01675 at 353.168 kb on - strand, within AO353_01675 at 353.409 kb on - strand, within AO353_01675
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 350,809 + AO353_01665 0.13 +0.9 350,809 + AO353_01665 0.13 +0.8 350,809 + AO353_01665 0.13 +0.3 350,809 + AO353_01665 0.13 +0.0 350,809 + AO353_01665 0.13 +1.4 350,809 + AO353_01665 0.13 +0.0 350,809 + AO353_01665 0.13 +1.7 350,810 - AO353_01665 0.13 +0.2 350,810 - AO353_01665 0.13 -0.7 350,810 - AO353_01665 0.13 +1.0 350,860 + AO353_01665 0.18 +0.3 350,860 + AO353_01665 0.18 +0.2 350,860 + AO353_01665 0.18 -0.4 350,860 + AO353_01665 0.18 +1.2 350,860 + AO353_01665 0.18 -1.3 350,861 - AO353_01665 0.18 -2.3 350,861 - AO353_01665 0.18 -0.1 350,861 - AO353_01665 0.18 -1.1 350,861 - AO353_01665 0.18 +2.1 350,953 + AO353_01665 0.27 -0.7 350,983 + AO353_01665 0.30 +0.1 350,983 + AO353_01665 0.30 -1.1 350,984 - AO353_01665 0.31 +0.3 350,984 - AO353_01665 0.31 -0.5 350,984 - AO353_01665 0.31 +0.2 350,984 - AO353_01665 0.31 -0.3 350,984 - AO353_01665 0.31 +0.4 350,984 - AO353_01665 0.31 -0.7 350,984 - AO353_01665 0.31 -0.3 351,010 + AO353_01665 0.33 -0.3 351,010 + AO353_01665 0.33 -0.6 351,010 + AO353_01665 0.33 -0.6 351,011 - AO353_01665 0.33 -2.3 351,011 - AO353_01665 0.33 +0.8 351,011 - AO353_01665 0.33 +0.4 351,011 - AO353_01665 0.33 -0.3 351,011 - AO353_01665 0.33 +2.1 351,013 - AO353_01665 0.33 -0.1 351,013 - AO353_01665 0.33 +0.5 351,046 + AO353_01665 0.37 +0.4 351,046 + AO353_01665 0.37 -0.3 351,046 + AO353_01665 0.37 +0.1 351,083 - AO353_01665 0.40 -0.3 351,083 - AO353_01665 0.40 +0.2 351,083 - AO353_01665 0.40 -0.5 351,083 - AO353_01665 0.40 -1.2 351,274 + AO353_01665 0.59 -0.3 351,274 + AO353_01665 0.59 -0.3 351,275 - AO353_01665 0.60 +0.4 351,275 - AO353_01665 0.60 +1.0 351,275 - AO353_01665 0.60 +2.3 351,326 + AO353_01665 0.65 +0.9 351,326 + AO353_01665 0.65 +0.0 351,326 + AO353_01665 0.65 +1.0 351,327 - AO353_01665 0.65 -1.3 351,327 - AO353_01665 0.65 -0.6 351,334 + AO353_01665 0.65 +0.6 351,334 + AO353_01665 0.65 +0.6 351,335 - AO353_01665 0.65 +0.3 351,335 - AO353_01665 0.65 +0.7 351,335 - AO353_01665 0.65 -0.1 351,357 + AO353_01665 0.68 -1.2 351,427 + AO353_01665 0.75 +1.3 351,427 + AO353_01665 0.75 +0.3 351,427 + AO353_01665 0.75 -0.2 351,427 + AO353_01665 0.75 +1.2 351,428 - AO353_01665 0.75 -0.7 351,428 - AO353_01665 0.75 -1.6 351,428 - AO353_01665 0.75 -0.3 351,463 + AO353_01665 0.78 +0.7 351,463 + AO353_01665 0.78 -0.8 351,463 + AO353_01665 0.78 +1.3 351,463 + AO353_01665 0.78 -0.8 351,463 + AO353_01665 0.78 +0.7 351,463 + AO353_01665 0.78 -1.3 351,463 + AO353_01665 0.78 -0.8 351,463 + AO353_01665 0.78 +0.4 351,463 + AO353_01665 0.78 -2.7 351,464 - AO353_01665 0.78 -0.3 351,464 - AO353_01665 0.78 +0.3 351,464 - AO353_01665 0.78 +1.2 351,464 - AO353_01665 0.78 -1.3 351,464 - AO353_01665 0.78 -0.3 351,464 - AO353_01665 0.78 +0.7 351,464 - AO353_01665 0.78 +0.4 351,467 + AO353_01665 0.79 -0.0 351,467 + AO353_01665 0.79 +1.3 351,468 - AO353_01665 0.79 -0.6 351,712 + +0.9 351,712 + -0.4 351,712 + +0.2 351,712 + +0.5 351,713 - -0.6 351,754 + -2.3 351,754 + +0.2 351,754 + -0.6 351,754 + +1.2 351,754 + -0.7 351,754 + +0.7 351,754 + +2.7 351,754 + -1.1 351,754 + +1.7 351,754 + +2.1 351,754 + +0.7 351,754 + +0.0 351,755 - -1.0 351,755 - -0.3 351,755 - +0.5 351,755 - -2.7 351,755 - +0.4 351,755 - -2.4 351,755 - -1.6 351,755 - +1.2 351,755 - -0.9 351,755 - -0.5 351,755 - +0.2 351,755 - -0.1 351,755 - -0.4 351,755 - -1.0 351,755 - +1.1 351,755 - +0.7 351,755 - +0.0 351,755 - -2.1 351,755 - +2.3 351,755 - -0.1 351,760 + +0.3 351,760 + -1.0 351,761 - -0.5 351,761 - -0.3 351,789 + -0.4 352,540 - -2.1 352,576 + -0.7 352,577 - -1.3 352,577 - -0.9 352,610 + -0.4 352,610 + +1.1 352,611 - +0.3 352,611 - +0.2 352,611 - -0.7 352,611 - +1.7 352,646 + -2.7 352,646 + +0.3 352,646 + -1.6 352,646 + -0.8 352,646 + -0.1 352,647 - +0.7 352,647 - -0.0 352,647 - +0.7 352,647 - -0.8 352,647 - -0.3 352,647 - -1.4 352,647 - -0.6 352,647 - +1.3 352,706 + +0.5 352,706 + +0.1 352,706 + +0.3 352,738 + +1.3 352,738 + -1.7 352,738 + +1.7 352,738 + +2.0 352,738 + +1.3 352,739 - +0.7 352,739 - +1.2 352,739 - +0.4 352,739 - -0.6 352,802 + +1.0 352,802 + -1.4 352,802 + +1.1 352,802 + +0.2 352,802 + -0.1 352,802 + -2.3 352,802 + +0.7 352,803 - -0.3 352,933 + AO353_01675 0.16 -1.6 352,933 + AO353_01675 0.16 -1.0 353,011 + AO353_01675 0.27 +2.1 353,012 - AO353_01675 0.27 -0.8 353,012 - AO353_01675 0.27 +0.4 353,012 - AO353_01675 0.27 +0.6 353,012 - AO353_01675 0.27 -1.7 353,167 + AO353_01675 0.47 -1.3 353,167 + AO353_01675 0.47 +0.2 353,167 + AO353_01675 0.47 -0.5 353,167 + AO353_01675 0.47 -1.7 353,167 + AO353_01675 0.47 -0.3 353,167 + AO353_01675 0.47 -1.7 353,168 - AO353_01675 0.47 -0.4 353,168 - AO353_01675 0.47 -0.3 353,168 - AO353_01675 0.47 +0.7 353,409 - AO353_01675 0.79 +0.7
Or see this region's nucleotide sequence