Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01160 and AO353_01165 are separated by 558 nucleotides AO353_01165 and AO353_01170 are separated by 66 nucleotides AO353_01170 and AO353_01175 overlap by 4 nucleotides
AO353_01160: AO353_01160 - acetyl-CoA acetyltransferase, at 256,666 to 257,871
_01160
AO353_01165: AO353_01165 - cytochrome C, at 258,430 to 259,284
_01165
AO353_01170: AO353_01170 - transglutaminase, at 259,351 to 260,154
_01170
AO353_01175: AO353_01175 - hypothetical protein, at 260,151 to 261,101
_01175
Position (kb) 258
259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.838 kb on + strand at 257.838 kb on + strand at 257.838 kb on + strand at 257.839 kb on - strand at 257.839 kb on - strand at 257.842 kb on + strand at 257.843 kb on - strand at 257.843 kb on - strand at 257.882 kb on + strand at 257.905 kb on - strand at 257.920 kb on + strand at 257.920 kb on + strand at 257.920 kb on + strand at 257.921 kb on - strand at 257.921 kb on - strand at 257.921 kb on - strand at 257.921 kb on - strand at 257.921 kb on - strand at 257.990 kb on + strand at 257.990 kb on + strand at 258.032 kb on + strand at 258.032 kb on + strand at 258.033 kb on - strand at 258.033 kb on - strand at 258.062 kb on - strand at 258.062 kb on - strand at 258.070 kb on + strand at 258.095 kb on + strand at 258.102 kb on + strand at 258.105 kb on + strand at 258.106 kb on - strand at 258.115 kb on + strand at 258.116 kb on - strand at 258.138 kb on + strand at 258.139 kb on - strand at 258.144 kb on - strand at 258.150 kb on + strand at 258.150 kb on + strand at 258.150 kb on + strand at 258.150 kb on + strand at 258.151 kb on - strand at 258.151 kb on - strand at 258.151 kb on - strand at 258.151 kb on - strand at 258.151 kb on - strand at 258.197 kb on + strand at 258.197 kb on + strand at 258.197 kb on + strand at 258.198 kb on - strand at 258.198 kb on - strand at 258.198 kb on - strand at 258.252 kb on - strand at 258.323 kb on + strand at 258.323 kb on + strand at 258.323 kb on + strand at 258.324 kb on - strand at 258.447 kb on + strand at 258.448 kb on - strand at 258.454 kb on + strand at 258.454 kb on + strand at 258.454 kb on + strand at 258.455 kb on - strand at 258.455 kb on - strand at 258.527 kb on - strand, within AO353_01165 at 258.859 kb on + strand, within AO353_01165 at 258.859 kb on + strand, within AO353_01165 at 258.860 kb on - strand, within AO353_01165 at 258.860 kb on - strand, within AO353_01165 at 258.892 kb on - strand, within AO353_01165 at 258.953 kb on + strand, within AO353_01165 at 259.117 kb on + strand, within AO353_01165 at 259.144 kb on + strand, within AO353_01165 at 259.144 kb on + strand, within AO353_01165 at 259.144 kb on + strand, within AO353_01165 at 259.144 kb on + strand, within AO353_01165 at 259.145 kb on - strand, within AO353_01165 at 259.145 kb on - strand, within AO353_01165 at 259.145 kb on - strand, within AO353_01165 at 259.145 kb on - strand, within AO353_01165 at 259.145 kb on - strand, within AO353_01165 at 259.147 kb on - strand, within AO353_01165 at 259.211 kb on + strand at 259.211 kb on + strand at 259.211 kb on + strand at 259.211 kb on + strand at 259.212 kb on - strand at 259.212 kb on - strand at 259.212 kb on - strand at 259.212 kb on - strand at 259.246 kb on + strand at 259.247 kb on - strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.258 kb on - strand at 259.269 kb on + strand at 259.352 kb on + strand at 259.352 kb on + strand at 259.352 kb on + strand at 259.352 kb on + strand at 259.352 kb on + strand at 259.353 kb on - strand at 259.460 kb on + strand, within AO353_01170 at 259.460 kb on + strand, within AO353_01170 at 259.461 kb on - strand, within AO353_01170 at 259.461 kb on - strand, within AO353_01170 at 259.461 kb on - strand, within AO353_01170 at 259.471 kb on + strand, within AO353_01170 at 259.471 kb on + strand, within AO353_01170 at 259.471 kb on + strand, within AO353_01170 at 259.471 kb on + strand, within AO353_01170 at 259.472 kb on - strand, within AO353_01170 at 259.529 kb on + strand, within AO353_01170 at 259.529 kb on + strand, within AO353_01170 at 259.529 kb on + strand, within AO353_01170 at 259.530 kb on - strand, within AO353_01170 at 259.530 kb on - strand, within AO353_01170 at 259.595 kb on + strand at 259.595 kb on + strand, within AO353_01170 at 259.596 kb on - strand, within AO353_01170 at 259.596 kb on - strand, within AO353_01170 at 259.596 kb on - strand, within AO353_01170 at 259.601 kb on + strand, within AO353_01170 at 259.601 kb on + strand, within AO353_01170 at 259.602 kb on - strand, within AO353_01170 at 259.602 kb on - strand, within AO353_01170 at 259.613 kb on + strand, within AO353_01170 at 259.613 kb on + strand, within AO353_01170 at 259.614 kb on - strand, within AO353_01170 at 259.614 kb on - strand, within AO353_01170 at 259.614 kb on - strand, within AO353_01170 at 259.614 kb on - strand, within AO353_01170 at 259.635 kb on + strand, within AO353_01170 at 259.641 kb on + strand, within AO353_01170 at 259.642 kb on - strand, within AO353_01170 at 259.739 kb on + strand, within AO353_01170 at 259.739 kb on + strand, within AO353_01170 at 259.740 kb on - strand, within AO353_01170 at 259.740 kb on - strand, within AO353_01170 at 259.740 kb on - strand, within AO353_01170 at 259.740 kb on - strand, within AO353_01170 at 259.740 kb on - strand, within AO353_01170 at 260.047 kb on + strand, within AO353_01170 at 260.047 kb on + strand, within AO353_01170 at 260.048 kb on - strand, within AO353_01170 at 260.048 kb on - strand, within AO353_01170 at 260.048 kb on - strand, within AO353_01170 at 260.048 kb on - strand, within AO353_01170 at 260.087 kb on + strand at 260.087 kb on + strand at 260.088 kb on - strand at 260.088 kb on - strand at 260.117 kb on + strand at 260.117 kb on + strand at 260.118 kb on - strand at 260.118 kb on - strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.167 kb on + strand at 260.168 kb on - strand at 260.168 kb on - strand at 260.168 kb on - strand at 260.178 kb on + strand at 260.179 kb on - strand at 260.179 kb on - strand at 260.179 kb on - strand at 260.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 257,838 + -0.4 257,838 + +0.7 257,838 + +0.3 257,839 - -1.6 257,839 - +0.7 257,842 + -0.7 257,843 - -0.9 257,843 - -1.5 257,882 + +0.1 257,905 - +0.5 257,920 + +0.9 257,920 + +1.4 257,920 + +0.3 257,921 - -1.3 257,921 - +1.0 257,921 - +0.7 257,921 - -0.3 257,921 - +1.7 257,990 + +2.1 257,990 + +0.2 258,032 + -0.3 258,032 + -1.3 258,033 - +1.0 258,033 - +0.3 258,062 - -1.4 258,062 - +0.7 258,070 + -0.3 258,095 + +0.4 258,102 + +0.4 258,105 + -1.4 258,106 - +0.6 258,115 + -1.1 258,116 - +0.3 258,138 + -0.4 258,139 - -0.3 258,144 - -0.3 258,150 + -0.0 258,150 + -0.7 258,150 + +0.0 258,150 + -0.3 258,151 - +0.4 258,151 - +0.3 258,151 - -0.9 258,151 - -0.7 258,151 - -0.1 258,197 + -0.5 258,197 + +0.1 258,197 + +1.7 258,198 - -0.3 258,198 - -1.0 258,198 - -0.3 258,252 - +0.7 258,323 + +0.1 258,323 + +0.3 258,323 + +1.1 258,324 - +0.9 258,447 + +0.4 258,448 - +0.4 258,454 + -2.3 258,454 + +0.4 258,454 + +0.1 258,455 - +1.5 258,455 - +0.5 258,527 - AO353_01165 0.11 -2.0 258,859 + AO353_01165 0.50 -1.6 258,859 + AO353_01165 0.50 -1.3 258,860 - AO353_01165 0.50 -0.6 258,860 - AO353_01165 0.50 -2.1 258,892 - AO353_01165 0.54 +0.1 258,953 + AO353_01165 0.61 -1.3 259,117 + AO353_01165 0.80 -0.9 259,144 + AO353_01165 0.84 -0.2 259,144 + AO353_01165 0.84 -0.3 259,144 + AO353_01165 0.84 -0.3 259,144 + AO353_01165 0.84 -1.5 259,145 - AO353_01165 0.84 +0.4 259,145 - AO353_01165 0.84 +0.7 259,145 - AO353_01165 0.84 -0.7 259,145 - AO353_01165 0.84 +0.1 259,145 - AO353_01165 0.84 +0.9 259,147 - AO353_01165 0.84 -0.8 259,211 + +0.3 259,211 + +0.1 259,211 + -1.5 259,211 + -0.0 259,212 - -0.9 259,212 - -0.4 259,212 - -0.9 259,212 - +0.4 259,246 + -1.2 259,247 - +0.7 259,257 + +0.5 259,257 + +2.0 259,257 + +0.0 259,257 + +0.9 259,257 + +1.1 259,257 + +0.7 259,257 + -0.3 259,258 - -0.6 259,269 + -0.3 259,352 + -0.0 259,352 + +1.1 259,352 + +0.3 259,352 + -1.6 259,352 + +1.6 259,353 - +0.0 259,460 + AO353_01170 0.14 +1.9 259,460 + AO353_01170 0.14 +0.8 259,461 - AO353_01170 0.14 -1.5 259,461 - AO353_01170 0.14 +0.1 259,461 - AO353_01170 0.14 +0.4 259,471 + AO353_01170 0.15 -0.5 259,471 + AO353_01170 0.15 -1.6 259,471 + AO353_01170 0.15 -0.3 259,471 + AO353_01170 0.15 -0.3 259,472 - AO353_01170 0.15 +0.9 259,529 + AO353_01170 0.22 -2.3 259,529 + AO353_01170 0.22 -1.5 259,529 + AO353_01170 0.22 +1.4 259,530 - AO353_01170 0.22 -0.1 259,530 - AO353_01170 0.22 -0.6 259,595 + -0.6 259,595 + AO353_01170 0.30 -0.0 259,596 - AO353_01170 0.30 -0.6 259,596 - AO353_01170 0.30 -1.6 259,596 - AO353_01170 0.30 +1.0 259,601 + AO353_01170 0.31 -0.1 259,601 + AO353_01170 0.31 +1.5 259,602 - AO353_01170 0.31 -0.4 259,602 - AO353_01170 0.31 -1.3 259,613 + AO353_01170 0.33 -0.1 259,613 + AO353_01170 0.33 +0.1 259,614 - AO353_01170 0.33 -0.5 259,614 - AO353_01170 0.33 -0.9 259,614 - AO353_01170 0.33 +0.7 259,614 - AO353_01170 0.33 -0.6 259,635 + AO353_01170 0.35 +0.7 259,641 + AO353_01170 0.36 +0.0 259,642 - AO353_01170 0.36 -0.6 259,739 + AO353_01170 0.48 +1.0 259,739 + AO353_01170 0.48 -0.3 259,740 - AO353_01170 0.48 +2.0 259,740 - AO353_01170 0.48 +0.0 259,740 - AO353_01170 0.48 +1.3 259,740 - AO353_01170 0.48 +1.5 259,740 - AO353_01170 0.48 +0.3 260,047 + AO353_01170 0.87 +0.1 260,047 + AO353_01170 0.87 +2.5 260,048 - AO353_01170 0.87 -1.6 260,048 - AO353_01170 0.87 +1.5 260,048 - AO353_01170 0.87 +2.3 260,048 - AO353_01170 0.87 -0.4 260,087 + -0.2 260,087 + +0.1 260,088 - +1.3 260,088 - +2.5 260,117 + +1.0 260,117 + -0.9 260,118 - -0.0 260,118 - -1.3 260,123 + -1.3 260,123 + -0.3 260,123 + -1.6 260,123 + -0.1 260,123 + -0.9 260,123 + +0.2 260,123 + +1.0 260,123 + +0.1 260,124 - -0.5 260,124 - -1.6 260,124 - +0.2 260,124 - +0.6 260,124 - +1.3 260,124 - -0.3 260,124 - +1.0 260,124 - +1.2 260,124 - +0.7 260,124 - +1.1 260,124 - -0.5 260,167 + -2.0 260,168 - -1.1 260,168 - +1.9 260,168 - -0.2 260,178 + -0.6 260,179 - +0.3 260,179 - +0.7 260,179 - +0.7 260,179 - +1.0
Or see this region's nucleotide sequence