Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00780 and AO353_00785 are separated by 393 nucleotides
AO353_00780: AO353_00780 - dihydroorotate dehydrogenase (quinone), at 175,817 to 176,836
_00780
AO353_00785: AO353_00785 - nitrate transporter, at 177,230 to 178,441
_00785
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.899 kb on + strand at 174.900 kb on - strand at 174.900 kb on - strand at 174.900 kb on - strand at 174.900 kb on - strand at 174.900 kb on - strand at 174.900 kb on - strand at 174.900 kb on - strand at 174.900 kb on - strand at 174.900 kb on - strand at 174.900 kb on - strand at 174.900 kb on - strand at 174.962 kb on + strand at 175.034 kb on - strand at 175.064 kb on - strand at 175.064 kb on - strand at 175.073 kb on + strand at 175.073 kb on + strand at 175.074 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.085 kb on + strand at 175.101 kb on - strand at 175.101 kb on - strand at 175.147 kb on + strand at 175.148 kb on - strand at 175.148 kb on - strand at 175.266 kb on + strand at 175.266 kb on + strand at 175.266 kb on + strand at 175.266 kb on + strand at 175.266 kb on + strand at 175.266 kb on + strand at 175.267 kb on - strand at 175.267 kb on - strand at 175.267 kb on - strand at 175.267 kb on - strand at 175.267 kb on - strand at 175.293 kb on + strand at 175.293 kb on + strand at 175.293 kb on + strand at 175.293 kb on + strand at 175.293 kb on + strand at 175.293 kb on + strand at 175.293 kb on + strand at 175.294 kb on - strand at 175.305 kb on + strand at 175.305 kb on + strand at 175.305 kb on + strand at 175.306 kb on - strand at 175.306 kb on - strand at 175.349 kb on - strand at 175.386 kb on + strand at 175.386 kb on + strand at 175.386 kb on + strand at 175.386 kb on + strand at 175.386 kb on + strand at 175.456 kb on - strand at 175.479 kb on + strand at 175.479 kb on + strand at 175.479 kb on + strand at 175.480 kb on - strand at 175.480 kb on - strand at 175.480 kb on - strand at 175.543 kb on + strand at 175.543 kb on + strand at 175.543 kb on + strand at 175.544 kb on - strand at 175.544 kb on - strand at 175.547 kb on + strand at 175.555 kb on + strand at 175.556 kb on - strand at 175.620 kb on + strand at 175.654 kb on + strand at 175.655 kb on - strand at 176.832 kb on + strand at 176.833 kb on - strand at 176.833 kb on - strand at 176.867 kb on - strand at 176.879 kb on - strand at 176.879 kb on - strand at 176.881 kb on - strand at 176.951 kb on - strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.055 kb on + strand at 177.056 kb on - strand at 177.080 kb on + strand at 177.080 kb on + strand at 177.080 kb on + strand at 177.081 kb on - strand at 177.081 kb on - strand at 177.081 kb on - strand at 177.081 kb on - strand at 177.095 kb on + strand at 177.139 kb on - strand at 177.145 kb on + strand at 177.146 kb on - strand at 177.146 kb on - strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.390 kb on + strand, within AO353_00785 at 177.390 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.465 kb on - strand at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.692 kb on + strand, within AO353_00785
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 174,899 + +0.3 174,899 + -1.6 174,899 + +0.3 174,899 + -0.5 174,899 + -0.9 174,899 + -1.3 174,899 + +0.3 174,899 + +1.4 174,899 + +0.7 174,899 + +0.3 174,899 + +0.1 174,899 + -0.3 174,899 + -0.1 174,899 + +0.2 174,899 + +0.5 174,900 - +0.5 174,900 - +1.2 174,900 - -0.3 174,900 - -0.2 174,900 - -2.1 174,900 - +0.4 174,900 - +1.1 174,900 - -0.3 174,900 - +2.3 174,900 - +1.5 174,900 - -0.3 174,962 + +0.7 175,034 - +1.2 175,064 - +0.1 175,064 - +0.7 175,073 + -0.7 175,073 + -0.8 175,074 - -0.1 175,078 - +0.1 175,078 - -1.3 175,078 - +0.0 175,078 - -0.9 175,085 + -0.3 175,101 - +0.0 175,101 - +0.7 175,147 + -2.1 175,148 - +0.2 175,148 - -0.1 175,266 + -2.1 175,266 + +1.4 175,266 + -0.7 175,266 + +1.2 175,266 + -0.4 175,266 + -0.1 175,267 - +1.2 175,267 - -0.5 175,267 - -1.1 175,267 - +1.3 175,267 - -0.9 175,293 + -0.3 175,293 + -0.5 175,293 + -0.1 175,293 + -0.6 175,293 + -1.3 175,293 + -0.1 175,293 + -1.3 175,294 - +1.0 175,305 + +0.9 175,305 + -0.6 175,305 + -0.2 175,306 - +0.5 175,306 - +0.1 175,349 - -1.6 175,386 + +1.7 175,386 + -1.6 175,386 + +1.0 175,386 + +0.7 175,386 + -0.3 175,456 - -0.3 175,479 + -1.1 175,479 + -1.9 175,479 + -0.6 175,480 - +0.5 175,480 - -1.1 175,480 - +0.7 175,543 + -0.5 175,543 + -1.2 175,543 + +1.4 175,544 - -1.2 175,544 - -0.3 175,547 + +3.3 175,555 + -2.1 175,556 - +0.4 175,620 + -0.2 175,654 + -1.3 175,655 - +0.0 176,832 + +0.1 176,833 - -1.5 176,833 - +0.7 176,867 - +0.3 176,879 - +0.8 176,879 - +1.4 176,881 - +1.9 176,951 - -0.3 177,007 + -1.0 177,007 + +0.6 177,007 + -0.5 177,007 + +0.2 177,007 + -1.3 177,007 + -0.3 177,007 + +0.9 177,055 + +0.9 177,056 - -0.0 177,080 + -1.6 177,080 + -0.1 177,080 + -1.9 177,081 - -0.6 177,081 - -0.0 177,081 - -1.2 177,081 - -1.9 177,095 + +0.9 177,139 - +0.7 177,145 + +1.0 177,146 - +0.6 177,146 - +0.5 177,224 + -0.7 177,224 + -0.9 177,224 + -1.8 177,224 + -0.7 177,224 + +0.4 177,224 + -0.3 177,224 + +0.7 177,224 + +2.3 177,224 + -1.9 177,224 + +1.2 177,225 - +0.7 177,225 - +0.6 177,225 - +1.2 177,225 - +1.3 177,225 - +0.7 177,225 - +0.9 177,225 - -0.9 177,225 - +0.4 177,225 - +0.4 177,390 + AO353_00785 0.13 +1.3 177,390 + AO353_00785 0.13 -0.3 177,464 + AO353_00785 0.19 +1.3 177,464 + AO353_00785 0.19 -2.3 177,464 + AO353_00785 0.19 -1.3 177,464 + AO353_00785 0.19 -0.9 177,464 + AO353_00785 0.19 -0.9 177,464 + AO353_00785 0.19 -0.9 177,464 + AO353_00785 0.19 +0.5 177,465 - -0.3 177,476 + AO353_00785 0.20 +0.6 177,476 + AO353_00785 0.20 +1.1 177,476 + AO353_00785 0.20 -0.3 177,476 + AO353_00785 0.20 +0.7 177,476 + AO353_00785 0.20 -0.1 177,476 + AO353_00785 0.20 +1.7 177,477 - AO353_00785 0.20 -0.6 177,477 - AO353_00785 0.20 +0.4 177,477 - AO353_00785 0.20 +1.0 177,477 - AO353_00785 0.20 -0.4 177,477 - AO353_00785 0.20 +0.6 177,689 + AO353_00785 0.38 -0.2 177,689 + AO353_00785 0.38 -0.1 177,689 + AO353_00785 0.38 +0.3 177,689 + AO353_00785 0.38 +0.3 177,689 + AO353_00785 0.38 -0.3 177,689 + AO353_00785 0.38 +2.0 177,689 + AO353_00785 0.38 -0.3 177,689 + AO353_00785 0.38 +2.5 177,689 + AO353_00785 0.38 -0.5 177,689 + AO353_00785 0.38 +0.0 177,689 + AO353_00785 0.38 +0.1 177,689 + AO353_00785 0.38 +0.5 177,689 + AO353_00785 0.38 +0.0 177,689 + AO353_00785 0.38 -0.3 177,689 + AO353_00785 0.38 -0.3 177,689 + AO353_00785 0.38 +0.7 177,690 - AO353_00785 0.38 +0.7 177,690 - AO353_00785 0.38 -0.0 177,690 - AO353_00785 0.38 -1.3 177,690 - AO353_00785 0.38 +2.0 177,690 - AO353_00785 0.38 -0.3 177,692 + AO353_00785 0.38 -1.1
Or see this region's nucleotide sequence