Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00690

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00685 and AO353_00690 are separated by 146 nucleotidesAO353_00690 and AO353_00695 are separated by 3 nucleotides AO353_00685: AO353_00685 - DNA polymerase III subunit gamma/tau, at 144,325 to 146,433 _00685 AO353_00690: AO353_00690 - amino acid ABC transporter substrate-binding protein, at 146,580 to 147,338 _00690 AO353_00695: AO353_00695 - diguanylate cyclase, at 147,342 to 149,042 _00695 Position (kb) 146 147 148Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 146.512 kb on + strandat 146.521 kb on + strandat 146.529 kb on + strandat 146.530 kb on - strandat 146.579 kb on + strandat 146.721 kb on + strand, within AO353_00690at 146.721 kb on + strand, within AO353_00690at 146.721 kb on + strand, within AO353_00690at 146.836 kb on - strand, within AO353_00690at 146.874 kb on + strand, within AO353_00690at 146.874 kb on + strand, within AO353_00690at 146.874 kb on + strand, within AO353_00690at 146.875 kb on - strand, within AO353_00690at 146.875 kb on - strand, within AO353_00690at 146.984 kb on - strand, within AO353_00690at 147.092 kb on + strand, within AO353_00690at 147.100 kb on - strand, within AO353_00690at 147.204 kb on + strand, within AO353_00690at 147.204 kb on + strand, within AO353_00690at 147.204 kb on + strand, within AO353_00690at 147.204 kb on + strand, within AO353_00690at 147.205 kb on - strand, within AO353_00690at 147.205 kb on - strand, within AO353_00690at 147.212 kb on + strand, within AO353_00690at 147.301 kb on - strandat 147.301 kb on - strandat 147.337 kb on - strandat 147.337 kb on - strandat 147.439 kb on + strandat 147.439 kb on + strandat 147.440 kb on - strandat 147.451 kb on - strandat 147.585 kb on + strand, within AO353_00695at 147.585 kb on + strand, within AO353_00695at 147.585 kb on + strand, within AO353_00695at 147.585 kb on + strand, within AO353_00695at 147.585 kb on + strand, within AO353_00695at 147.585 kb on + strand, within AO353_00695at 147.585 kb on + strand, within AO353_00695at 147.585 kb on + strand, within AO353_00695at 147.586 kb on - strand, within AO353_00695at 147.586 kb on - strand, within AO353_00695at 147.586 kb on - strand, within AO353_00695at 147.586 kb on - strand, within AO353_00695at 147.605 kb on + strand, within AO353_00695at 147.606 kb on - strand, within AO353_00695at 147.644 kb on - strand, within AO353_00695at 147.737 kb on + strand, within AO353_00695at 147.738 kb on - strand, within AO353_00695at 147.738 kb on - strand, within AO353_00695at 147.738 kb on - strand, within AO353_00695at 147.738 kb on - strand, within AO353_00695at 148.216 kb on + strand, within AO353_00695at 148.216 kb on + strand, within AO353_00695at 148.216 kb on + strand, within AO353_00695at 148.216 kb on + strand, within AO353_00695at 148.216 kb on + strand, within AO353_00695at 148.216 kb on + strand, within AO353_00695at 148.216 kb on + strand, within AO353_00695at 148.216 kb on + strand, within AO353_00695at 148.216 kb on + strand, within AO353_00695at 148.216 kb on + strand, within AO353_00695at 148.216 kb on + strand, within AO353_00695at 148.217 kb on - strand, within AO353_00695at 148.217 kb on - strand, within AO353_00695at 148.217 kb on - strand, within AO353_00695at 148.217 kb on - strand, within AO353_00695at 148.217 kb on - strand, within AO353_00695at 148.217 kb on - strand, within AO353_00695at 148.217 kb on - strand, within AO353_00695at 148.328 kb on - strand, within AO353_00695

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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146,512 + +0.2
146,521 + +0.4
146,529 + -0.9
146,530 - +1.2
146,579 + +0.5
146,721 + AO353_00690 0.19 -0.5
146,721 + AO353_00690 0.19 -0.4
146,721 + AO353_00690 0.19 -1.1
146,836 - AO353_00690 0.34 +0.7
146,874 + AO353_00690 0.39 +0.4
146,874 + AO353_00690 0.39 -0.0
146,874 + AO353_00690 0.39 -1.1
146,875 - AO353_00690 0.39 -2.3
146,875 - AO353_00690 0.39 +1.7
146,984 - AO353_00690 0.53 +1.3
147,092 + AO353_00690 0.67 +0.0
147,100 - AO353_00690 0.69 +1.0
147,204 + AO353_00690 0.82 +0.7
147,204 + AO353_00690 0.82 -2.0
147,204 + AO353_00690 0.82 -1.0
147,204 + AO353_00690 0.82 -1.2
147,205 - AO353_00690 0.82 -0.0
147,205 - AO353_00690 0.82 -0.9
147,212 + AO353_00690 0.83 -1.6
147,301 - +0.7
147,301 - +1.9
147,337 - -0.8
147,337 - -0.6
147,439 + -3.0
147,439 + -1.9
147,440 - -0.3
147,451 - -0.4
147,585 + AO353_00695 0.14 +1.7
147,585 + AO353_00695 0.14 +0.9
147,585 + AO353_00695 0.14 -0.5
147,585 + AO353_00695 0.14 -1.9
147,585 + AO353_00695 0.14 -0.3
147,585 + AO353_00695 0.14 +0.1
147,585 + AO353_00695 0.14 -0.6
147,585 + AO353_00695 0.14 -0.8
147,586 - AO353_00695 0.14 -0.3
147,586 - AO353_00695 0.14 -0.3
147,586 - AO353_00695 0.14 +0.3
147,586 - AO353_00695 0.14 -0.6
147,605 + AO353_00695 0.15 +0.0
147,606 - AO353_00695 0.16 -0.6
147,644 - AO353_00695 0.18 -0.5
147,737 + AO353_00695 0.23 -0.6
147,738 - AO353_00695 0.23 -0.5
147,738 - AO353_00695 0.23 -0.9
147,738 - AO353_00695 0.23 -0.0
147,738 - AO353_00695 0.23 -2.9
148,216 + AO353_00695 0.51 -2.1
148,216 + AO353_00695 0.51 -0.3
148,216 + AO353_00695 0.51 -1.4
148,216 + AO353_00695 0.51 -1.8
148,216 + AO353_00695 0.51 +0.4
148,216 + AO353_00695 0.51 -0.6
148,216 + AO353_00695 0.51 -1.2
148,216 + AO353_00695 0.51 -0.5
148,216 + AO353_00695 0.51 -0.3
148,216 + AO353_00695 0.51 +0.3
148,216 + AO353_00695 0.51 -1.3
148,217 - AO353_00695 0.51 -3.2
148,217 - AO353_00695 0.51 +0.4
148,217 - AO353_00695 0.51 -0.1
148,217 - AO353_00695 0.51 -1.8
148,217 - AO353_00695 0.51 -0.3
148,217 - AO353_00695 0.51 -1.4
148,217 - AO353_00695 0.51 -0.3
148,328 - AO353_00695 0.58 -1.2

Or see this region's nucleotide sequence