Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3967 and Shewana3_3968 are separated by 6 nucleotides Shewana3_3968 and Shewana3_3969 are separated by 59 nucleotides
Shewana3_3967: Shewana3_3967 - O-succinylbenzoate synthase (RefSeq), at 4,765,686 to 4,766,735
_3967
Shewana3_3968: Shewana3_3968 - O-succinylbenzoate-CoA ligase (RefSeq), at 4,766,742 to 4,768,205
_3968
Shewana3_3969: Shewana3_3969 - RNA polymerase factor sigma-32 (RefSeq), at 4,768,265 to 4,769,122
_3969
Position (kb)
4766
4767
4768
4769 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4765.776 kb on + strand at 4765.804 kb on - strand, within Shewana3_3967 at 4765.906 kb on + strand, within Shewana3_3967 at 4766.010 kb on + strand, within Shewana3_3967 at 4766.011 kb on + strand, within Shewana3_3967 at 4766.018 kb on - strand, within Shewana3_3967 at 4766.190 kb on - strand, within Shewana3_3967 at 4766.244 kb on - strand, within Shewana3_3967 at 4766.272 kb on + strand, within Shewana3_3967 at 4766.388 kb on + strand, within Shewana3_3967 at 4766.390 kb on - strand, within Shewana3_3967 at 4766.517 kb on + strand, within Shewana3_3967 at 4766.655 kb on + strand at 4766.663 kb on - strand at 4766.686 kb on + strand at 4766.814 kb on + strand at 4766.822 kb on - strand at 4766.936 kb on - strand, within Shewana3_3968 at 4766.984 kb on + strand, within Shewana3_3968 at 4767.059 kb on - strand, within Shewana3_3968 at 4767.145 kb on - strand, within Shewana3_3968 at 4767.173 kb on + strand, within Shewana3_3968 at 4767.228 kb on - strand, within Shewana3_3968 at 4767.534 kb on - strand, within Shewana3_3968 at 4767.752 kb on + strand, within Shewana3_3968 at 4767.896 kb on + strand, within Shewana3_3968 at 4768.056 kb on - strand, within Shewana3_3968 at 4768.056 kb on - strand, within Shewana3_3968 at 4768.123 kb on - strand at 4768.134 kb on - strand at 4768.289 kb on - strand at 4769.199 kb on - strand at 4769.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 4,765,776 + -4.2 4,765,804 - Shewana3_3967 0.11 -2.0 4,765,906 + Shewana3_3967 0.21 -3.1 4,766,010 + Shewana3_3967 0.31 -2.4 4,766,011 + Shewana3_3967 0.31 -0.6 4,766,018 - Shewana3_3967 0.32 -1.3 4,766,190 - Shewana3_3967 0.48 -2.0 4,766,244 - Shewana3_3967 0.53 -1.8 4,766,272 + Shewana3_3967 0.56 -0.9 4,766,388 + Shewana3_3967 0.67 -1.4 4,766,390 - Shewana3_3967 0.67 -2.5 4,766,517 + Shewana3_3967 0.79 -1.8 4,766,655 + -1.0 4,766,663 - -2.1 4,766,686 + -1.2 4,766,814 + -0.5 4,766,822 - -3.8 4,766,936 - Shewana3_3968 0.13 -2.8 4,766,984 + Shewana3_3968 0.17 -2.6 4,767,059 - Shewana3_3968 0.22 -1.8 4,767,145 - Shewana3_3968 0.28 -3.4 4,767,173 + Shewana3_3968 0.29 -1.6 4,767,228 - Shewana3_3968 0.33 -3.6 4,767,534 - Shewana3_3968 0.54 -2.5 4,767,752 + Shewana3_3968 0.69 -3.0 4,767,896 + Shewana3_3968 0.79 -2.6 4,768,056 - Shewana3_3968 0.90 +1.1 4,768,056 - Shewana3_3968 0.90 +1.1 4,768,123 - -0.3 4,768,134 - -3.2 4,768,289 - -0.3 4,769,199 - -1.8 4,769,199 - -0.9
Or see this region's nucleotide sequence