Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3965 and Shewana3_3966 overlap by 1 nucleotides Shewana3_3966 and Shewana3_3967 are separated by 22 nucleotides Shewana3_3967 and Shewana3_3968 are separated by 6 nucleotides
Shewana3_3965: Shewana3_3965 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase (RefSeq), at 4,763,139 to 4,764,860
_3965
Shewana3_3966: Shewana3_3966 - alpha/beta hydrolase fold (RefSeq), at 4,764,860 to 4,765,663
_3966
Shewana3_3967: Shewana3_3967 - O-succinylbenzoate synthase (RefSeq), at 4,765,686 to 4,766,735
_3967
Shewana3_3968: Shewana3_3968 - O-succinylbenzoate-CoA ligase (RefSeq), at 4,766,742 to 4,768,205
_3968
Position (kb)
4765
4766
4767 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4764.882 kb on + strand at 4764.962 kb on - strand, within Shewana3_3966 at 4765.047 kb on + strand, within Shewana3_3966 at 4765.047 kb on - strand, within Shewana3_3966 at 4765.135 kb on - strand, within Shewana3_3966 at 4765.142 kb on + strand, within Shewana3_3966 at 4765.142 kb on + strand, within Shewana3_3966 at 4765.150 kb on - strand, within Shewana3_3966 at 4765.159 kb on + strand, within Shewana3_3966 at 4765.400 kb on - strand, within Shewana3_3966 at 4765.400 kb on - strand, within Shewana3_3966 at 4765.577 kb on - strand, within Shewana3_3966 at 4765.634 kb on - strand at 4765.725 kb on + strand at 4765.776 kb on + strand at 4765.804 kb on - strand, within Shewana3_3967 at 4765.906 kb on + strand, within Shewana3_3967 at 4766.010 kb on + strand, within Shewana3_3967 at 4766.011 kb on + strand, within Shewana3_3967 at 4766.018 kb on - strand, within Shewana3_3967 at 4766.190 kb on - strand, within Shewana3_3967 at 4766.244 kb on - strand, within Shewana3_3967 at 4766.272 kb on + strand, within Shewana3_3967 at 4766.388 kb on + strand, within Shewana3_3967 at 4766.390 kb on - strand, within Shewana3_3967 at 4766.517 kb on + strand, within Shewana3_3967 at 4766.655 kb on + strand at 4766.663 kb on - strand at 4766.686 kb on + strand at 4766.814 kb on + strand at 4766.822 kb on - strand at 4766.936 kb on - strand, within Shewana3_3968 at 4766.984 kb on + strand, within Shewana3_3968 at 4767.059 kb on - strand, within Shewana3_3968 at 4767.145 kb on - strand, within Shewana3_3968 at 4767.173 kb on + strand, within Shewana3_3968 at 4767.228 kb on - strand, within Shewana3_3968 at 4767.534 kb on - strand, within Shewana3_3968
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 4,764,882 + -0.4 4,764,962 - Shewana3_3966 0.13 -2.7 4,765,047 + Shewana3_3966 0.23 -1.8 4,765,047 - Shewana3_3966 0.23 -1.1 4,765,135 - Shewana3_3966 0.34 -2.7 4,765,142 + Shewana3_3966 0.35 -1.6 4,765,142 + Shewana3_3966 0.35 -1.8 4,765,150 - Shewana3_3966 0.36 -1.7 4,765,159 + Shewana3_3966 0.37 -1.2 4,765,400 - Shewana3_3966 0.67 -1.0 4,765,400 - Shewana3_3966 0.67 -0.4 4,765,577 - Shewana3_3966 0.89 -2.1 4,765,634 - -1.9 4,765,725 + -2.2 4,765,776 + -4.2 4,765,804 - Shewana3_3967 0.11 -2.0 4,765,906 + Shewana3_3967 0.21 -3.1 4,766,010 + Shewana3_3967 0.31 -2.4 4,766,011 + Shewana3_3967 0.31 -0.6 4,766,018 - Shewana3_3967 0.32 -1.3 4,766,190 - Shewana3_3967 0.48 -2.0 4,766,244 - Shewana3_3967 0.53 -1.8 4,766,272 + Shewana3_3967 0.56 -0.9 4,766,388 + Shewana3_3967 0.67 -1.4 4,766,390 - Shewana3_3967 0.67 -2.5 4,766,517 + Shewana3_3967 0.79 -1.8 4,766,655 + -1.0 4,766,663 - -2.1 4,766,686 + -1.2 4,766,814 + -0.5 4,766,822 - -3.8 4,766,936 - Shewana3_3968 0.13 -2.8 4,766,984 + Shewana3_3968 0.17 -2.6 4,767,059 - Shewana3_3968 0.22 -1.8 4,767,145 - Shewana3_3968 0.28 -3.4 4,767,173 + Shewana3_3968 0.29 -1.6 4,767,228 - Shewana3_3968 0.33 -3.6 4,767,534 - Shewana3_3968 0.54 -2.5
Or see this region's nucleotide sequence