Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3967

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3965 and Shewana3_3966 overlap by 1 nucleotidesShewana3_3966 and Shewana3_3967 are separated by 22 nucleotidesShewana3_3967 and Shewana3_3968 are separated by 6 nucleotides Shewana3_3965: Shewana3_3965 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase (RefSeq), at 4,763,139 to 4,764,860 _3965 Shewana3_3966: Shewana3_3966 - alpha/beta hydrolase fold (RefSeq), at 4,764,860 to 4,765,663 _3966 Shewana3_3967: Shewana3_3967 - O-succinylbenzoate synthase (RefSeq), at 4,765,686 to 4,766,735 _3967 Shewana3_3968: Shewana3_3968 - O-succinylbenzoate-CoA ligase (RefSeq), at 4,766,742 to 4,768,205 _3968 Position (kb) 4765 4766 4767Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4764.882 kb on + strandat 4764.962 kb on - strand, within Shewana3_3966at 4765.047 kb on + strand, within Shewana3_3966at 4765.047 kb on - strand, within Shewana3_3966at 4765.135 kb on - strand, within Shewana3_3966at 4765.142 kb on + strand, within Shewana3_3966at 4765.142 kb on + strand, within Shewana3_3966at 4765.150 kb on - strand, within Shewana3_3966at 4765.159 kb on + strand, within Shewana3_3966at 4765.400 kb on - strand, within Shewana3_3966at 4765.400 kb on - strand, within Shewana3_3966at 4765.577 kb on - strand, within Shewana3_3966at 4765.634 kb on - strandat 4765.725 kb on + strandat 4765.776 kb on + strandat 4765.804 kb on - strand, within Shewana3_3967at 4765.906 kb on + strand, within Shewana3_3967at 4766.010 kb on + strand, within Shewana3_3967at 4766.011 kb on + strand, within Shewana3_3967at 4766.018 kb on - strand, within Shewana3_3967at 4766.190 kb on - strand, within Shewana3_3967at 4766.244 kb on - strand, within Shewana3_3967at 4766.272 kb on + strand, within Shewana3_3967at 4766.388 kb on + strand, within Shewana3_3967at 4766.390 kb on - strand, within Shewana3_3967at 4766.517 kb on + strand, within Shewana3_3967at 4766.655 kb on + strandat 4766.663 kb on - strandat 4766.686 kb on + strandat 4766.814 kb on + strandat 4766.822 kb on - strandat 4766.936 kb on - strand, within Shewana3_3968at 4766.984 kb on + strand, within Shewana3_3968at 4767.059 kb on - strand, within Shewana3_3968at 4767.145 kb on - strand, within Shewana3_3968at 4767.173 kb on + strand, within Shewana3_3968at 4767.228 kb on - strand, within Shewana3_3968at 4767.534 kb on - strand, within Shewana3_3968

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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4,764,882 + -0.4
4,764,962 - Shewana3_3966 0.13 -2.7
4,765,047 + Shewana3_3966 0.23 -1.8
4,765,047 - Shewana3_3966 0.23 -1.1
4,765,135 - Shewana3_3966 0.34 -2.7
4,765,142 + Shewana3_3966 0.35 -1.6
4,765,142 + Shewana3_3966 0.35 -1.8
4,765,150 - Shewana3_3966 0.36 -1.7
4,765,159 + Shewana3_3966 0.37 -1.2
4,765,400 - Shewana3_3966 0.67 -1.0
4,765,400 - Shewana3_3966 0.67 -0.4
4,765,577 - Shewana3_3966 0.89 -2.1
4,765,634 - -1.9
4,765,725 + -2.2
4,765,776 + -4.2
4,765,804 - Shewana3_3967 0.11 -2.0
4,765,906 + Shewana3_3967 0.21 -3.1
4,766,010 + Shewana3_3967 0.31 -2.4
4,766,011 + Shewana3_3967 0.31 -0.6
4,766,018 - Shewana3_3967 0.32 -1.3
4,766,190 - Shewana3_3967 0.48 -2.0
4,766,244 - Shewana3_3967 0.53 -1.8
4,766,272 + Shewana3_3967 0.56 -0.9
4,766,388 + Shewana3_3967 0.67 -1.4
4,766,390 - Shewana3_3967 0.67 -2.5
4,766,517 + Shewana3_3967 0.79 -1.8
4,766,655 + -1.0
4,766,663 - -2.1
4,766,686 + -1.2
4,766,814 + -0.5
4,766,822 - -3.8
4,766,936 - Shewana3_3968 0.13 -2.8
4,766,984 + Shewana3_3968 0.17 -2.6
4,767,059 - Shewana3_3968 0.22 -1.8
4,767,145 - Shewana3_3968 0.28 -3.4
4,767,173 + Shewana3_3968 0.29 -1.6
4,767,228 - Shewana3_3968 0.33 -3.6
4,767,534 - Shewana3_3968 0.54 -2.5

Or see this region's nucleotide sequence