Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3321 and Shewana3_3322 are separated by 246 nucleotides Shewana3_3322 and Shewana3_3323 are separated by 100 nucleotides Shewana3_3323 and Shewana3_3324 are separated by 89 nucleotides
Shewana3_3321: Shewana3_3321 - hypothetical protein (RefSeq), at 3,982,516 to 3,983,043
_3321
Shewana3_3322: Shewana3_3322 - hypothetical protein (RefSeq), at 3,983,290 to 3,983,835
_3322
Shewana3_3323: Shewana3_3323 - spermine synthase (RefSeq), at 3,983,936 to 3,984,679
_3323
Shewana3_3324: Shewana3_3324 - peptidase M17, leucyl aminopeptidase domain-containing protein (RefSeq), at 3,984,769 to 3,986,304
_3324
Position (kb)
3983
3984
3985 Strain fitness (log2 ratio)
-2
-1
0
1 at 3982.999 kb on + strand at 3983.085 kb on + strand at 3983.085 kb on + strand at 3983.095 kb on + strand at 3983.103 kb on - strand at 3983.103 kb on - strand at 3983.103 kb on - strand at 3983.103 kb on - strand at 3983.118 kb on - strand at 3983.482 kb on - strand, within Shewana3_3322 at 3983.562 kb on + strand, within Shewana3_3322 at 3983.638 kb on + strand, within Shewana3_3322 at 3983.660 kb on + strand, within Shewana3_3322 at 3983.668 kb on - strand, within Shewana3_3322 at 3984.010 kb on - strand at 3984.010 kb on - strand at 3984.168 kb on + strand, within Shewana3_3323 at 3984.168 kb on + strand, within Shewana3_3323 at 3984.168 kb on + strand, within Shewana3_3323 at 3984.174 kb on - strand, within Shewana3_3323 at 3984.363 kb on + strand, within Shewana3_3323 at 3984.432 kb on - strand, within Shewana3_3323 at 3984.518 kb on + strand, within Shewana3_3323 at 3984.518 kb on + strand, within Shewana3_3323 at 3984.526 kb on - strand, within Shewana3_3323 at 3984.586 kb on - strand, within Shewana3_3323 at 3984.714 kb on + strand at 3984.722 kb on - strand at 3984.722 kb on - strand at 3984.722 kb on - strand at 3984.744 kb on - strand at 3984.756 kb on - strand at 3984.816 kb on + strand at 3984.816 kb on + strand at 3984.824 kb on - strand at 3984.884 kb on + strand at 3984.902 kb on - strand at 3985.087 kb on - strand, within Shewana3_3324 at 3985.087 kb on - strand, within Shewana3_3324 at 3985.136 kb on - strand, within Shewana3_3324 at 3985.204 kb on - strand, within Shewana3_3324 at 3985.204 kb on - strand, within Shewana3_3324 at 3985.214 kb on - strand, within Shewana3_3324 at 3985.222 kb on - strand, within Shewana3_3324 at 3985.237 kb on - strand, within Shewana3_3324 at 3985.294 kb on - strand, within Shewana3_3324 at 3985.462 kb on + strand, within Shewana3_3324 at 3985.570 kb on + strand, within Shewana3_3324
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 3,982,999 + +0.4 3,983,085 + -0.8 3,983,085 + -0.1 3,983,095 + -0.0 3,983,103 - +0.0 3,983,103 - +0.2 3,983,103 - +0.2 3,983,103 - -0.2 3,983,118 - -0.0 3,983,482 - Shewana3_3322 0.35 +0.2 3,983,562 + Shewana3_3322 0.50 -0.0 3,983,638 + Shewana3_3322 0.64 +0.8 3,983,660 + Shewana3_3322 0.68 +0.8 3,983,668 - Shewana3_3322 0.69 -0.4 3,984,010 - -0.4 3,984,010 - -0.3 3,984,168 + Shewana3_3323 0.31 +0.6 3,984,168 + Shewana3_3323 0.31 +0.4 3,984,168 + Shewana3_3323 0.31 -1.6 3,984,174 - Shewana3_3323 0.32 -1.2 3,984,363 + Shewana3_3323 0.57 -0.3 3,984,432 - Shewana3_3323 0.67 +0.7 3,984,518 + Shewana3_3323 0.78 +0.0 3,984,518 + Shewana3_3323 0.78 +0.7 3,984,526 - Shewana3_3323 0.79 -0.0 3,984,586 - Shewana3_3323 0.87 +0.3 3,984,714 + +1.1 3,984,722 - +0.0 3,984,722 - +0.3 3,984,722 - -0.1 3,984,744 - -0.3 3,984,756 - +0.3 3,984,816 + +0.2 3,984,816 + +0.1 3,984,824 - +0.2 3,984,884 + +0.3 3,984,902 - +0.8 3,985,087 - Shewana3_3324 0.21 -0.1 3,985,087 - Shewana3_3324 0.21 -1.8 3,985,136 - Shewana3_3324 0.24 -0.5 3,985,204 - Shewana3_3324 0.28 -0.6 3,985,204 - Shewana3_3324 0.28 +0.8 3,985,214 - Shewana3_3324 0.29 +0.2 3,985,222 - Shewana3_3324 0.29 -0.0 3,985,237 - Shewana3_3324 0.30 -0.6 3,985,294 - Shewana3_3324 0.34 +0.8 3,985,462 + Shewana3_3324 0.45 -0.3 3,985,570 + Shewana3_3324 0.52 -0.0
Or see this region's nucleotide sequence