Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3077

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3076 and Shewana3_3077 are separated by 234 nucleotidesShewana3_3077 and Shewana3_3078 are separated by 623 nucleotides Shewana3_3076: Shewana3_3076 - metal dependent phosphohydrolase (RefSeq), at 3,689,642 to 3,690,892 _3076 Shewana3_3077: Shewana3_3077 - major outer membrane lipoprotein, putative (RefSeq), at 3,691,127 to 3,691,393 _3077 Shewana3_3078: Shewana3_3078 - ribosomal RNA large subunit methyltransferase A, putative (RefSeq), at 3,692,017 to 3,692,856 _3078 Position (kb) 3691 3692Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 3690.426 kb on + strand, within Shewana3_3076at 3691.169 kb on + strand, within Shewana3_3077at 3691.185 kb on + strand, within Shewana3_3077at 3691.192 kb on + strand, within Shewana3_3077at 3691.215 kb on + strand, within Shewana3_3077at 3691.215 kb on + strand, within Shewana3_3077at 3691.274 kb on + strand, within Shewana3_3077at 3691.288 kb on + strand, within Shewana3_3077at 3691.297 kb on + strand, within Shewana3_3077at 3691.547 kb on - strandat 3691.565 kb on + strandat 3691.573 kb on - strandat 3691.573 kb on - strandat 3691.573 kb on - strandat 3691.573 kb on - strandat 3691.583 kb on + strandat 3691.616 kb on + strandat 3691.616 kb on + strandat 3691.624 kb on - strandat 3691.647 kb on - strandat 3691.744 kb on + strandat 3692.016 kb on + strandat 3692.024 kb on - strandat 3692.081 kb on + strandat 3692.117 kb on - strand, within Shewana3_3078at 3692.253 kb on + strand, within Shewana3_3078at 3692.378 kb on + strand, within Shewana3_3078

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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3,690,426 + Shewana3_3076 0.63 -2.7
3,691,169 + Shewana3_3077 0.16 -6.7
3,691,185 + Shewana3_3077 0.22 -3.6
3,691,192 + Shewana3_3077 0.24 -4.6
3,691,215 + Shewana3_3077 0.33 -3.9
3,691,215 + Shewana3_3077 0.33 -4.7
3,691,274 + Shewana3_3077 0.55 -6.6
3,691,288 + Shewana3_3077 0.60 -3.9
3,691,297 + Shewana3_3077 0.64 -5.8
3,691,547 - -0.5
3,691,565 + +0.6
3,691,573 - +0.6
3,691,573 - -1.0
3,691,573 - +0.2
3,691,573 - +0.6
3,691,583 + +0.6
3,691,616 + +0.6
3,691,616 + +2.2
3,691,624 - +0.6
3,691,647 - +0.6
3,691,744 + -0.4
3,692,016 + +0.6
3,692,024 - -0.4
3,692,081 + -2.0
3,692,117 - Shewana3_3078 0.12 -0.3
3,692,253 + Shewana3_3078 0.28 -1.4
3,692,378 + Shewana3_3078 0.43 +2.6

Or see this region's nucleotide sequence