Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2843 and Shewana3_2844 are separated by 614 nucleotides Shewana3_2844 and Shewana3_2845 are separated by 171 nucleotides
Shewana3_2843: Shewana3_2843 - 2-nitropropane dioxygenase, NPD (RefSeq), at 3,402,696 to 3,404,342
_2843
Shewana3_2844: Shewana3_2844 - hypothetical protein (RefSeq), at 3,404,957 to 3,405,271
_2844
Shewana3_2845: Shewana3_2845 - hypothetical protein (RefSeq), at 3,405,443 to 3,405,871
_2845
Position (kb)
3404
3405
3406 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3403.992 kb on - strand, within Shewana3_2843 at 3403.996 kb on + strand, within Shewana3_2843 at 3403.996 kb on + strand, within Shewana3_2843 at 3404.036 kb on + strand, within Shewana3_2843 at 3404.107 kb on - strand, within Shewana3_2843 at 3404.274 kb on - strand at 3404.333 kb on - strand at 3404.358 kb on - strand at 3404.515 kb on + strand at 3404.536 kb on - strand at 3404.536 kb on - strand at 3404.536 kb on - strand at 3404.576 kb on + strand at 3404.747 kb on - strand at 3404.831 kb on - strand at 3405.059 kb on + strand, within Shewana3_2844 at 3405.067 kb on - strand, within Shewana3_2844 at 3405.113 kb on - strand, within Shewana3_2844 at 3405.118 kb on + strand, within Shewana3_2844 at 3405.205 kb on - strand, within Shewana3_2844 at 3405.279 kb on + strand at 3405.522 kb on + strand, within Shewana3_2845 at 3405.830 kb on - strand at 3405.879 kb on + strand at 3405.887 kb on - strand at 3406.231 kb on + strand at 3406.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 3,403,992 - Shewana3_2843 0.79 +1.5 3,403,996 + Shewana3_2843 0.79 -0.5 3,403,996 + Shewana3_2843 0.79 +0.3 3,404,036 + Shewana3_2843 0.81 +0.4 3,404,107 - Shewana3_2843 0.86 +0.5 3,404,274 - +0.5 3,404,333 - +0.5 3,404,358 - -1.1 3,404,515 + +0.5 3,404,536 - +0.0 3,404,536 - -0.1 3,404,536 - +0.3 3,404,576 + +0.8 3,404,747 - -0.6 3,404,831 - +0.5 3,405,059 + Shewana3_2844 0.32 -0.5 3,405,067 - Shewana3_2844 0.35 -2.5 3,405,113 - Shewana3_2844 0.50 -0.5 3,405,118 + Shewana3_2844 0.51 -1.2 3,405,205 - Shewana3_2844 0.79 +1.1 3,405,279 + -0.5 3,405,522 + Shewana3_2845 0.18 +1.8 3,405,830 - +0.5 3,405,879 + +0.3 3,405,887 - +0.2 3,406,231 + +1.0 3,406,240 - +0.8
Or see this region's nucleotide sequence