Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2709 and Shewana3_2710 are separated by 167 nucleotides Shewana3_2710 and Shewana3_2711 are separated by 472 nucleotides Shewana3_2711 and Shewana3_2712 are separated by 26 nucleotides
Shewana3_2709: Shewana3_2709 - hypothetical protein (RefSeq), at 3,237,925 to 3,239,454
_2709
Shewana3_2710: Shewana3_2710 - integral membrane protein TerC (RefSeq), at 3,239,622 to 3,240,599
_2710
Shewana3_2711: Shewana3_2711 - hypothetical protein (RefSeq), at 3,241,072 to 3,241,356
_2711
Shewana3_2712: Shewana3_2712 - 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq), at 3,241,383 to 3,242,567
_2712
Position (kb)
3239
3240
3241 Strain fitness (log2 ratio)
-1
0
1
2 at 3238.716 kb on - strand, within Shewana3_2709 at 3238.847 kb on + strand, within Shewana3_2709 at 3238.852 kb on + strand, within Shewana3_2709 at 3239.005 kb on - strand, within Shewana3_2709 at 3239.256 kb on - strand, within Shewana3_2709 at 3239.333 kb on + strand at 3239.481 kb on + strand at 3239.735 kb on - strand, within Shewana3_2710 at 3239.999 kb on - strand, within Shewana3_2710 at 3240.112 kb on - strand, within Shewana3_2710 at 3240.261 kb on + strand, within Shewana3_2710 at 3240.281 kb on - strand, within Shewana3_2710 at 3240.294 kb on + strand, within Shewana3_2710 at 3240.505 kb on + strand at 3240.674 kb on + strand at 3240.733 kb on + strand at 3240.793 kb on + strand at 3240.881 kb on - strand at 3240.942 kb on + strand at 3240.942 kb on + strand at 3240.942 kb on + strand at 3240.950 kb on - strand at 3241.197 kb on + strand, within Shewana3_2711 at 3241.289 kb on + strand, within Shewana3_2711 at 3241.393 kb on + strand at 3241.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 3,238,716 - Shewana3_2709 0.52 -0.2 3,238,847 + Shewana3_2709 0.60 +1.1 3,238,852 + Shewana3_2709 0.61 +0.5 3,239,005 - Shewana3_2709 0.71 +0.5 3,239,256 - Shewana3_2709 0.87 +0.5 3,239,333 + +2.2 3,239,481 + +0.8 3,239,735 - Shewana3_2710 0.12 -0.1 3,239,999 - Shewana3_2710 0.39 -1.5 3,240,112 - Shewana3_2710 0.50 -1.3 3,240,261 + Shewana3_2710 0.65 +0.5 3,240,281 - Shewana3_2710 0.67 -1.1 3,240,294 + Shewana3_2710 0.69 -0.1 3,240,505 + +0.5 3,240,674 + +0.5 3,240,733 + +2.5 3,240,793 + +0.3 3,240,881 - -0.2 3,240,942 + -0.0 3,240,942 + -0.5 3,240,942 + -0.5 3,240,950 - +1.1 3,241,197 + Shewana3_2711 0.44 +0.5 3,241,289 + Shewana3_2711 0.76 +0.5 3,241,393 + +2.5 3,241,424 + -0.1
Or see this region's nucleotide sequence