Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2633 and Shewana3_2634 are separated by 5 nucleotides Shewana3_2634 and Shewana3_2635 are separated by 33 nucleotides Shewana3_2635 and Shewana3_2636 are separated by 846 nucleotides
Shewana3_2633: Shewana3_2633 - hypothetical protein (RefSeq), at 3,142,399 to 3,143,091
_2633
Shewana3_2634: Shewana3_2634 - histone deacetylase superfamily protein (RefSeq), at 3,143,097 to 3,143,999
_2634
Shewana3_2635: Shewana3_2635 - hypothetical protein (RefSeq), at 3,144,033 to 3,144,320
_2635
Shewana3_2636: Shewana3_2636 - hypothetical protein (RefSeq), at 3,145,167 to 3,146,663
_2636
Position (kb)
3144
3145 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3143.098 kb on - strand at 3143.151 kb on - strand at 3143.330 kb on - strand, within Shewana3_2634 at 3143.438 kb on - strand, within Shewana3_2634 at 3143.596 kb on + strand, within Shewana3_2634 at 3143.610 kb on + strand, within Shewana3_2634 at 3143.938 kb on - strand at 3143.994 kb on - strand at 3144.134 kb on + strand, within Shewana3_2635 at 3144.276 kb on - strand, within Shewana3_2635 at 3144.310 kb on - strand at 3144.329 kb on + strand at 3144.360 kb on + strand at 3144.583 kb on - strand at 3144.661 kb on + strand at 3144.678 kb on - strand at 3144.911 kb on + strand at 3144.916 kb on + strand at 3144.924 kb on - strand at 3144.924 kb on - strand at 3144.928 kb on + strand at 3144.935 kb on + strand at 3144.958 kb on + strand at 3144.959 kb on - strand at 3144.966 kb on - strand at 3145.006 kb on + strand at 3145.013 kb on - strand at 3145.014 kb on - strand at 3145.025 kb on - strand at 3145.042 kb on + strand at 3145.048 kb on + strand at 3145.050 kb on - strand at 3145.050 kb on - strand at 3145.070 kb on - strand at 3145.160 kb on - strand at 3145.162 kb on + strand at 3145.162 kb on + strand at 3145.163 kb on - strand at 3145.170 kb on - strand at 3145.170 kb on - strand at 3145.170 kb on - strand at 3145.229 kb on - strand at 3145.229 kb on - strand at 3145.231 kb on + strand at 3145.231 kb on + strand at 3145.234 kb on - strand at 3145.234 kb on - strand at 3145.239 kb on - strand at 3145.239 kb on - strand at 3145.239 kb on - strand at 3145.239 kb on - strand at 3145.252 kb on + strand at 3145.260 kb on - strand at 3145.260 kb on - strand at 3145.291 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 3,143,098 - +0.5 3,143,151 - +0.3 3,143,330 - Shewana3_2634 0.26 +0.3 3,143,438 - Shewana3_2634 0.38 -2.7 3,143,596 + Shewana3_2634 0.55 +0.5 3,143,610 + Shewana3_2634 0.57 +0.5 3,143,938 - +0.5 3,143,994 - -0.5 3,144,134 + Shewana3_2635 0.35 -1.1 3,144,276 - Shewana3_2635 0.84 +0.5 3,144,310 - +0.5 3,144,329 + +1.5 3,144,360 + +0.5 3,144,583 - +0.5 3,144,661 + +0.5 3,144,678 - +0.5 3,144,911 + +0.5 3,144,916 + +2.5 3,144,924 - +1.5 3,144,924 - +1.5 3,144,928 + +0.5 3,144,935 + +0.5 3,144,958 + -0.5 3,144,959 - -1.5 3,144,966 - +0.5 3,145,006 + +0.5 3,145,013 - +0.5 3,145,014 - -0.5 3,145,025 - -1.1 3,145,042 + +0.5 3,145,048 + +0.5 3,145,050 - -0.7 3,145,050 - -0.5 3,145,070 - -0.5 3,145,160 - -0.5 3,145,162 + +0.5 3,145,162 + +0.5 3,145,163 - +0.5 3,145,170 - +0.5 3,145,170 - -0.5 3,145,170 - +2.0 3,145,229 - +0.3 3,145,229 - +0.0 3,145,231 + -0.5 3,145,231 + +0.5 3,145,234 - -1.3 3,145,234 - -0.5 3,145,239 - -0.1 3,145,239 - +1.8 3,145,239 - +0.2 3,145,239 - -2.1 3,145,252 + -0.1 3,145,260 - +0.5 3,145,260 - +0.5 3,145,291 - +1.0
Or see this region's nucleotide sequence