Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2587 and Shewana3_2588 are separated by 149 nucleotides Shewana3_2588 and Shewana3_2589 are separated by 151 nucleotides Shewana3_2589 and Shewana3_2590 are separated by 77 nucleotides Shewana3_2590 and Shewana3_2591 overlap by 14 nucleotides
Shewana3_2587: Shewana3_2587 - NnrS family protein (RefSeq), at 3,092,547 to 3,093,719
_2587
Shewana3_2588: Shewana3_2588 - phosphate-starvation-inducible E (RefSeq), at 3,093,869 to 3,094,273
_2588
Shewana3_2589: Shewana3_2589 - type IV pilus assembly PilZ (RefSeq), at 3,094,425 to 3,094,727
_2589
Shewana3_2590: Shewana3_2590 - hypothetical protein (RefSeq), at 3,094,805 to 3,095,473
_2590
Shewana3_2591: Shewana3_2591 - RepA domain-containing protein (RefSeq), at 3,095,460 to 3,095,801
_2591
Position (kb)
3094
3095 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3093.615 kb on + strand at 3093.676 kb on + strand at 3094.124 kb on - strand, within Shewana3_2588 at 3094.300 kb on + strand at 3094.323 kb on - strand at 3094.497 kb on + strand, within Shewana3_2589 at 3094.505 kb on - strand, within Shewana3_2589 at 3094.530 kb on - strand, within Shewana3_2589 at 3094.686 kb on - strand, within Shewana3_2589 at 3094.686 kb on - strand, within Shewana3_2589 at 3094.760 kb on + strand at 3094.760 kb on + strand at 3095.074 kb on + strand, within Shewana3_2590 at 3095.077 kb on - strand, within Shewana3_2590 at 3095.127 kb on + strand, within Shewana3_2590 at 3095.203 kb on + strand, within Shewana3_2590 at 3095.220 kb on + strand, within Shewana3_2590 at 3095.220 kb on + strand, within Shewana3_2590 at 3095.228 kb on - strand, within Shewana3_2590 at 3095.356 kb on + strand, within Shewana3_2590
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 3,093,615 + -0.0 3,093,676 + +1.3 3,094,124 - Shewana3_2588 0.63 -0.5 3,094,300 + +1.5 3,094,323 - +1.5 3,094,497 + Shewana3_2589 0.24 +0.5 3,094,505 - Shewana3_2589 0.26 +0.5 3,094,530 - Shewana3_2589 0.35 +0.5 3,094,686 - Shewana3_2589 0.86 +0.5 3,094,686 - Shewana3_2589 0.86 -1.8 3,094,760 + -0.5 3,094,760 + +2.0 3,095,074 + Shewana3_2590 0.40 +0.5 3,095,077 - Shewana3_2590 0.41 -1.5 3,095,127 + Shewana3_2590 0.48 -0.5 3,095,203 + Shewana3_2590 0.59 +0.5 3,095,220 + Shewana3_2590 0.62 -0.9 3,095,220 + Shewana3_2590 0.62 -0.5 3,095,228 - Shewana3_2590 0.63 +1.5 3,095,356 + Shewana3_2590 0.82 +0.5
Or see this region's nucleotide sequence