Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpmF and Shewana3_2563 are separated by 17 nucleotides Shewana3_2563 and Shewana3_2564 are separated by 286 nucleotides Shewana3_2564 and Shewana3_2565 are separated by 160 nucleotides Shewana3_2565 and Shewana3_2566 are separated by 51 nucleotides
Shewana3_2562: rpmF - 50S ribosomal protein L32 (RefSeq), at 3,064,184 to 3,064,354
rpmF
Shewana3_2563: Shewana3_2563 - hypothetical protein (RefSeq), at 3,064,372 to 3,064,896
_2563
Shewana3_2564: Shewana3_2564 - maf protein (RefSeq), at 3,065,183 to 3,065,770
_2564
Shewana3_2565: Shewana3_2565 - HAD family hydrolase (RefSeq), at 3,065,931 to 3,066,665
_2565
Shewana3_2566: Shewana3_2566 - ribosomal large subunit pseudouridine synthase C (RefSeq), at 3,066,717 to 3,067,706
_2566
Position (kb)
3065
3066 Strain fitness (log2 ratio)
-1
0
1
2 at 3065.041 kb on + strand at 3065.041 kb on + strand at 3065.069 kb on + strand at 3065.537 kb on + strand, within Shewana3_2564 at 3065.572 kb on + strand, within Shewana3_2564 at 3065.642 kb on + strand, within Shewana3_2564 at 3065.648 kb on + strand, within Shewana3_2564 at 3065.712 kb on + strand at 3065.720 kb on - strand at 3065.727 kb on + strand at 3065.770 kb on + strand at 3065.778 kb on - strand at 3065.830 kb on - strand at 3065.892 kb on - strand at 3066.031 kb on + strand, within Shewana3_2565 at 3066.065 kb on - strand, within Shewana3_2565 at 3066.156 kb on - strand, within Shewana3_2565 at 3066.222 kb on + strand, within Shewana3_2565 at 3066.230 kb on - strand, within Shewana3_2565 at 3066.230 kb on - strand, within Shewana3_2565 at 3066.335 kb on + strand, within Shewana3_2565 at 3066.671 kb on - strand at 3066.671 kb on - strand at 3066.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 3,065,041 + +0.4 3,065,041 + -1.1 3,065,069 + +0.4 3,065,537 + Shewana3_2564 0.60 -0.7 3,065,572 + Shewana3_2564 0.66 -1.1 3,065,642 + Shewana3_2564 0.78 +0.0 3,065,648 + Shewana3_2564 0.79 -1.1 3,065,712 + +0.4 3,065,720 - +0.1 3,065,727 + +0.4 3,065,770 + -0.6 3,065,778 - -0.6 3,065,830 - +1.0 3,065,892 - +1.0 3,066,031 + Shewana3_2565 0.14 -1.1 3,066,065 - Shewana3_2565 0.18 -0.5 3,066,156 - Shewana3_2565 0.31 +0.0 3,066,222 + Shewana3_2565 0.40 +0.5 3,066,230 - Shewana3_2565 0.41 +2.0 3,066,230 - Shewana3_2565 0.41 +0.5 3,066,335 + Shewana3_2565 0.55 +1.5 3,066,671 - +0.1 3,066,671 - -0.1 3,066,693 - +0.5
Or see this region's nucleotide sequence