Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2564

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpmF and Shewana3_2563 are separated by 17 nucleotidesShewana3_2563 and Shewana3_2564 are separated by 286 nucleotidesShewana3_2564 and Shewana3_2565 are separated by 160 nucleotidesShewana3_2565 and Shewana3_2566 are separated by 51 nucleotides Shewana3_2562: rpmF - 50S ribosomal protein L32 (RefSeq), at 3,064,184 to 3,064,354 rpmF Shewana3_2563: Shewana3_2563 - hypothetical protein (RefSeq), at 3,064,372 to 3,064,896 _2563 Shewana3_2564: Shewana3_2564 - maf protein (RefSeq), at 3,065,183 to 3,065,770 _2564 Shewana3_2565: Shewana3_2565 - HAD family hydrolase (RefSeq), at 3,065,931 to 3,066,665 _2565 Shewana3_2566: Shewana3_2566 - ribosomal large subunit pseudouridine synthase C (RefSeq), at 3,066,717 to 3,067,706 _2566 Position (kb) 3065 3066Strain fitness (log2 ratio) -1 0 1 2at 3065.041 kb on + strandat 3065.041 kb on + strandat 3065.069 kb on + strandat 3065.537 kb on + strand, within Shewana3_2564at 3065.572 kb on + strand, within Shewana3_2564at 3065.642 kb on + strand, within Shewana3_2564at 3065.648 kb on + strand, within Shewana3_2564at 3065.712 kb on + strandat 3065.720 kb on - strandat 3065.727 kb on + strandat 3065.770 kb on + strandat 3065.778 kb on - strandat 3065.830 kb on - strandat 3065.892 kb on - strandat 3066.031 kb on + strand, within Shewana3_2565at 3066.065 kb on - strand, within Shewana3_2565at 3066.156 kb on - strand, within Shewana3_2565at 3066.222 kb on + strand, within Shewana3_2565at 3066.230 kb on - strand, within Shewana3_2565at 3066.230 kb on - strand, within Shewana3_2565at 3066.335 kb on + strand, within Shewana3_2565at 3066.671 kb on - strandat 3066.671 kb on - strandat 3066.693 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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3,065,041 + +0.4
3,065,041 + -1.1
3,065,069 + +0.4
3,065,537 + Shewana3_2564 0.60 -0.7
3,065,572 + Shewana3_2564 0.66 -1.1
3,065,642 + Shewana3_2564 0.78 +0.0
3,065,648 + Shewana3_2564 0.79 -1.1
3,065,712 + +0.4
3,065,720 - +0.1
3,065,727 + +0.4
3,065,770 + -0.6
3,065,778 - -0.6
3,065,830 - +1.0
3,065,892 - +1.0
3,066,031 + Shewana3_2565 0.14 -1.1
3,066,065 - Shewana3_2565 0.18 -0.5
3,066,156 - Shewana3_2565 0.31 +0.0
3,066,222 + Shewana3_2565 0.40 +0.5
3,066,230 - Shewana3_2565 0.41 +2.0
3,066,230 - Shewana3_2565 0.41 +0.5
3,066,335 + Shewana3_2565 0.55 +1.5
3,066,671 - +0.1
3,066,671 - -0.1
3,066,693 - +0.5

Or see this region's nucleotide sequence