Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2524

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2523 and Shewana3_2524 are separated by 226 nucleotidesShewana3_2524 and grxA are separated by 60 nucleotidesgrxA and Shewana3_2526 are separated by 58 nucleotides Shewana3_2523: Shewana3_2523 - acetyl-CoA synthetase (RefSeq), at 3,019,358 to 3,021,310 _2523 Shewana3_2524: Shewana3_2524 - type III restriction enzyme, res subunit (RefSeq), at 3,021,537 to 3,023,309 _2524 Shewana3_2525: grxA - glutaredoxin 1 (RefSeq), at 3,023,370 to 3,023,630 grxA Shewana3_2526: Shewana3_2526 - hypothetical protein (RefSeq), at 3,023,689 to 3,024,852 _2526 Position (kb) 3021 3022 3023 3024Strain fitness (log2 ratio) -1 0 1 2at 3020.738 kb on - strand, within Shewana3_2523at 3020.838 kb on + strand, within Shewana3_2523at 3021.004 kb on - strand, within Shewana3_2523at 3021.060 kb on + strand, within Shewana3_2523at 3021.068 kb on - strand, within Shewana3_2523at 3021.166 kb on - strandat 3021.354 kb on + strandat 3021.354 kb on + strandat 3021.498 kb on - strandat 3021.498 kb on - strandat 3021.498 kb on - strandat 3021.644 kb on - strandat 3021.722 kb on - strand, within Shewana3_2524at 3021.961 kb on + strand, within Shewana3_2524at 3022.348 kb on - strand, within Shewana3_2524at 3022.585 kb on + strand, within Shewana3_2524at 3022.864 kb on - strand, within Shewana3_2524at 3022.878 kb on + strand, within Shewana3_2524at 3023.198 kb on - strandat 3023.335 kb on - strandat 3023.755 kb on + strandat 3023.775 kb on - strandat 3023.855 kb on - strand, within Shewana3_2526at 3023.893 kb on + strand, within Shewana3_2526at 3023.895 kb on + strand, within Shewana3_2526at 3024.256 kb on + strand, within Shewana3_2526

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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3,020,738 - Shewana3_2523 0.71 +0.4
3,020,838 + Shewana3_2523 0.76 +0.4
3,021,004 - Shewana3_2523 0.84 +0.4
3,021,060 + Shewana3_2523 0.87 -0.3
3,021,068 - Shewana3_2523 0.88 +0.4
3,021,166 - +0.4
3,021,354 + -0.8
3,021,354 + -1.4
3,021,498 - +0.6
3,021,498 - +2.7
3,021,498 - -0.2
3,021,644 - +1.2
3,021,722 - Shewana3_2524 0.10 -0.6
3,021,961 + Shewana3_2524 0.24 +0.4
3,022,348 - Shewana3_2524 0.46 -0.6
3,022,585 + Shewana3_2524 0.59 +0.4
3,022,864 - Shewana3_2524 0.75 +0.4
3,022,878 + Shewana3_2524 0.76 -0.6
3,023,198 - +0.4
3,023,335 - +0.4
3,023,755 + +0.4
3,023,775 - +0.4
3,023,855 - Shewana3_2526 0.14 +0.3
3,023,893 + Shewana3_2526 0.18 +0.4
3,023,895 + Shewana3_2526 0.18 -0.6
3,024,256 + Shewana3_2526 0.49 +0.4

Or see this region's nucleotide sequence