Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2264 and Shewana3_2265 are separated by 193 nucleotides Shewana3_2265 and Shewana3_2266 are separated by 68 nucleotides Shewana3_2266 and Shewana3_2267 are separated by 132 nucleotides
Shewana3_2264: Shewana3_2264 - sulphate transporter (RefSeq), at 2,724,842 to 2,726,599
_2264
Shewana3_2265: Shewana3_2265 - lysine exporter protein LysE/YggA (RefSeq), at 2,726,793 to 2,727,419
_2265
Shewana3_2266: Shewana3_2266 - GntR family transcriptional regulator (RefSeq), at 2,727,488 to 2,728,870
_2266
Shewana3_2267: Shewana3_2267 - alkaline phosphatase (RefSeq), at 2,729,003 to 2,730,877
_2267
Position (kb)
2727
2728
2729 Strain fitness (log2 ratio)
-2
-1
0
1 at 2726.586 kb on - strand at 2726.764 kb on + strand at 2726.830 kb on - strand at 2727.016 kb on - strand, within Shewana3_2265 at 2727.078 kb on - strand, within Shewana3_2265 at 2727.084 kb on - strand, within Shewana3_2265 at 2727.248 kb on - strand, within Shewana3_2265 at 2727.561 kb on + strand at 2727.610 kb on + strand at 2727.685 kb on + strand, within Shewana3_2266 at 2727.687 kb on + strand, within Shewana3_2266 at 2727.906 kb on + strand, within Shewana3_2266 at 2727.954 kb on + strand, within Shewana3_2266 at 2728.241 kb on + strand, within Shewana3_2266 at 2728.398 kb on + strand, within Shewana3_2266 at 2728.524 kb on + strand, within Shewana3_2266 at 2728.625 kb on + strand, within Shewana3_2266 at 2728.655 kb on + strand, within Shewana3_2266 at 2728.715 kb on + strand, within Shewana3_2266 at 2728.830 kb on + strand at 2729.019 kb on - strand at 2729.094 kb on - strand at 2729.438 kb on + strand, within Shewana3_2267 at 2729.540 kb on - strand, within Shewana3_2267 at 2729.605 kb on + strand, within Shewana3_2267 at 2729.822 kb on - strand, within Shewana3_2267
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 2,726,586 - +0.4 2,726,764 + +0.4 2,726,830 - +0.4 2,727,016 - Shewana3_2265 0.36 -0.3 2,727,078 - Shewana3_2265 0.45 -1.9 2,727,084 - Shewana3_2265 0.46 +0.4 2,727,248 - Shewana3_2265 0.73 -2.5 2,727,561 + +0.8 2,727,610 + -2.4 2,727,685 + Shewana3_2266 0.14 +0.5 2,727,687 + Shewana3_2266 0.14 -0.6 2,727,906 + Shewana3_2266 0.30 +0.4 2,727,954 + Shewana3_2266 0.34 -0.2 2,728,241 + Shewana3_2266 0.54 +0.2 2,728,398 + Shewana3_2266 0.66 +0.0 2,728,524 + Shewana3_2266 0.75 +0.3 2,728,625 + Shewana3_2266 0.82 +0.2 2,728,655 + Shewana3_2266 0.84 +0.1 2,728,715 + Shewana3_2266 0.89 +0.1 2,728,830 + +0.0 2,729,019 - -1.0 2,729,094 - +1.3 2,729,438 + Shewana3_2267 0.23 +0.4 2,729,540 - Shewana3_2267 0.29 -1.2 2,729,605 + Shewana3_2267 0.32 +0.4 2,729,822 - Shewana3_2267 0.44 +0.4
Or see this region's nucleotide sequence