Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2205 and Shewana3_2206 overlap by 1 nucleotides Shewana3_2206 and Shewana3_2207 are separated by 630 nucleotides
Shewana3_2205: Shewana3_2205 - AraC family transcriptional regulator (RefSeq), at 2,646,442 to 2,647,620
_2205
Shewana3_2206: Shewana3_2206 - diguanylate cyclase (RefSeq), at 2,647,620 to 2,648,585
_2206
Shewana3_2207: Shewana3_2207 - TonB-dependent receptor (RefSeq), at 2,649,216 to 2,652,050
_2207
Position (kb)
2647
2648
2649 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2646.697 kb on + strand, within Shewana3_2205 at 2646.697 kb on + strand, within Shewana3_2205 at 2646.705 kb on - strand, within Shewana3_2205 at 2646.817 kb on + strand, within Shewana3_2205 at 2646.992 kb on + strand, within Shewana3_2205 at 2647.092 kb on - strand, within Shewana3_2205 at 2647.170 kb on + strand, within Shewana3_2205 at 2647.170 kb on + strand, within Shewana3_2205 at 2647.559 kb on - strand at 2647.559 kb on - strand at 2647.661 kb on - strand at 2647.952 kb on + strand, within Shewana3_2206 at 2648.126 kb on + strand, within Shewana3_2206 at 2648.134 kb on - strand, within Shewana3_2206 at 2648.229 kb on + strand, within Shewana3_2206 at 2648.280 kb on - strand, within Shewana3_2206 at 2648.284 kb on + strand, within Shewana3_2206 at 2648.318 kb on + strand, within Shewana3_2206 at 2648.318 kb on + strand, within Shewana3_2206 at 2648.479 kb on + strand, within Shewana3_2206 at 2648.487 kb on - strand, within Shewana3_2206 at 2648.534 kb on + strand at 2648.606 kb on - strand at 2649.081 kb on - strand at 2649.139 kb on - strand at 2649.185 kb on - strand at 2649.348 kb on + strand at 2649.454 kb on + strand at 2649.536 kb on + strand, within Shewana3_2207 at 2649.544 kb on - strand, within Shewana3_2207 at 2649.570 kb on - strand, within Shewana3_2207
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 2,646,697 + Shewana3_2205 0.22 +1.0 2,646,697 + Shewana3_2205 0.22 +1.0 2,646,705 - Shewana3_2205 0.22 +1.4 2,646,817 + Shewana3_2205 0.32 +0.1 2,646,992 + Shewana3_2205 0.47 -1.1 2,647,092 - Shewana3_2205 0.55 +0.4 2,647,170 + Shewana3_2205 0.62 -1.1 2,647,170 + Shewana3_2205 0.62 +2.0 2,647,559 - +0.4 2,647,559 - +1.4 2,647,661 - +0.0 2,647,952 + Shewana3_2206 0.34 +0.4 2,648,126 + Shewana3_2206 0.52 +0.4 2,648,134 - Shewana3_2206 0.53 +0.4 2,648,229 + Shewana3_2206 0.63 +0.4 2,648,280 - Shewana3_2206 0.68 -0.3 2,648,284 + Shewana3_2206 0.69 -0.6 2,648,318 + Shewana3_2206 0.72 +0.4 2,648,318 + Shewana3_2206 0.72 +0.4 2,648,479 + Shewana3_2206 0.89 +0.4 2,648,487 - Shewana3_2206 0.90 -0.9 2,648,534 + -2.2 2,648,606 - +0.4 2,649,081 - +0.4 2,649,139 - -1.0 2,649,185 - -0.2 2,649,348 + +1.4 2,649,454 + +1.7 2,649,536 + Shewana3_2207 0.11 +0.4 2,649,544 - Shewana3_2207 0.12 -0.7 2,649,570 - Shewana3_2207 0.12 +3.2
Or see this region's nucleotide sequence