Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2119

Experiment: Anaero. fumarate as e acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2117 and Shewana3_2118 are separated by 59 nucleotidesShewana3_2118 and Shewana3_2119 overlap by 8 nucleotidesShewana3_2119 and Shewana3_2120 are separated by 317 nucleotides Shewana3_2117: Shewana3_2117 - PP-loop domain-containing protein (RefSeq), at 2,540,707 to 2,541,675 _2117 Shewana3_2118: Shewana3_2118 - hypothetical protein (RefSeq), at 2,541,735 to 2,542,358 _2118 Shewana3_2119: Shewana3_2119 - mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (RefSeq), at 2,542,351 to 2,543,163 _2119 Shewana3_2120: Shewana3_2120 - hypothetical protein (RefSeq), at 2,543,481 to 2,544,404 _2120 Position (kb) 2542 2543 2544Strain fitness (log2 ratio) -1 0 1at 2541.429 kb on + strand, within Shewana3_2117at 2541.749 kb on + strandat 2541.823 kb on - strand, within Shewana3_2118at 2541.856 kb on - strand, within Shewana3_2118at 2541.876 kb on - strand, within Shewana3_2118at 2542.008 kb on + strand, within Shewana3_2118at 2542.053 kb on - strand, within Shewana3_2118at 2542.568 kb on - strand, within Shewana3_2119at 2542.601 kb on + strand, within Shewana3_2119at 2542.774 kb on + strand, within Shewana3_2119at 2542.846 kb on + strand, within Shewana3_2119at 2543.124 kb on - strandat 2543.129 kb on - strandat 2543.285 kb on - strandat 2543.640 kb on + strand, within Shewana3_2120at 2543.645 kb on + strand, within Shewana3_2120at 2543.803 kb on + strand, within Shewana3_2120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
remove
2,541,429 + Shewana3_2117 0.75 +1.2
2,541,749 + +0.5
2,541,823 - Shewana3_2118 0.14 -1.0
2,541,856 - Shewana3_2118 0.19 +0.0
2,541,876 - Shewana3_2118 0.23 +1.1
2,542,008 + Shewana3_2118 0.44 +0.5
2,542,053 - Shewana3_2118 0.51 +0.6
2,542,568 - Shewana3_2119 0.27 -0.5
2,542,601 + Shewana3_2119 0.31 +0.5
2,542,774 + Shewana3_2119 0.52 +0.5
2,542,846 + Shewana3_2119 0.61 +0.5
2,543,124 - -0.5
2,543,129 - +0.5
2,543,285 - -0.5
2,543,640 + Shewana3_2120 0.17 +0.8
2,543,645 + Shewana3_2120 0.18 +0.5
2,543,803 + Shewana3_2120 0.35 -0.5

Or see this region's nucleotide sequence