Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2090 and Shewana3_2091 overlap by 4 nucleotides Shewana3_2091 and Shewana3_2092 are separated by 2 nucleotides
Shewana3_2090: Shewana3_2090 - formate dehydrogenase beta subunit (RefSeq), at 2,509,801 to 2,510,703
_2090
Shewana3_2091: Shewana3_2091 - formate dehydrogenase gamma subunit (RefSeq), at 2,510,700 to 2,511,323
_2091
Shewana3_2092: Shewana3_2092 - formate dehydrogenase accessory protein FdhE (RefSeq), at 2,511,326 to 2,512,225
_2092
Position (kb)
2511
2512
2513 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2510.426 kb on + strand, within Shewana3_2090 at 2510.569 kb on + strand, within Shewana3_2090 at 2510.820 kb on - strand, within Shewana3_2091 at 2510.984 kb on - strand, within Shewana3_2091 at 2511.078 kb on + strand, within Shewana3_2091 at 2511.115 kb on - strand, within Shewana3_2091 at 2511.154 kb on + strand, within Shewana3_2091 at 2511.209 kb on - strand, within Shewana3_2091 at 2511.269 kb on + strand at 2511.604 kb on - strand, within Shewana3_2092 at 2511.671 kb on + strand, within Shewana3_2092 at 2511.681 kb on + strand, within Shewana3_2092 at 2511.691 kb on + strand, within Shewana3_2092 at 2511.763 kb on + strand, within Shewana3_2092 at 2511.864 kb on - strand, within Shewana3_2092 at 2511.872 kb on + strand, within Shewana3_2092 at 2511.911 kb on - strand, within Shewana3_2092 at 2511.931 kb on - strand, within Shewana3_2092 at 2512.033 kb on + strand, within Shewana3_2092 at 2512.758 kb on + strand at 2512.779 kb on - strand at 2512.930 kb on + strand at 2513.140 kb on + strand at 2513.143 kb on - strand at 2513.143 kb on - strand at 2513.143 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 2,510,426 + Shewana3_2090 0.69 +1.2 2,510,569 + Shewana3_2090 0.85 +2.0 2,510,820 - Shewana3_2091 0.19 -1.1 2,510,984 - Shewana3_2091 0.46 +0.5 2,511,078 + Shewana3_2091 0.61 -0.1 2,511,115 - Shewana3_2091 0.67 +0.5 2,511,154 + Shewana3_2091 0.73 -0.5 2,511,209 - Shewana3_2091 0.82 -1.1 2,511,269 + +0.9 2,511,604 - Shewana3_2092 0.31 +2.8 2,511,671 + Shewana3_2092 0.38 +0.5 2,511,681 + Shewana3_2092 0.39 +1.1 2,511,691 + Shewana3_2092 0.41 +0.5 2,511,763 + Shewana3_2092 0.49 -1.0 2,511,864 - Shewana3_2092 0.60 +0.5 2,511,872 + Shewana3_2092 0.61 +1.5 2,511,911 - Shewana3_2092 0.65 -1.1 2,511,931 - Shewana3_2092 0.67 +0.5 2,512,033 + Shewana3_2092 0.79 +0.2 2,512,758 + +1.5 2,512,779 - +0.5 2,512,930 + +0.5 2,513,140 + +1.5 2,513,143 - +0.5 2,513,143 - +0.5 2,513,143 - +1.5
Or see this region's nucleotide sequence