Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1969

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnrdB and Shewana3_1969 are separated by 16 nucleotidesShewana3_1969 and Shewana3_1970 are separated by 485 nucleotides Shewana3_1968: nrdB - ribonucleotide-diphosphate reductase subunit beta (RefSeq), at 2,342,097 to 2,343,272 nrdB Shewana3_1969: Shewana3_1969 - ribonucleotide-diphosphate reductase subunit alpha (RefSeq), at 2,343,289 to 2,345,577 _1969 Shewana3_1970: Shewana3_1970 - HAD family hydrolase (RefSeq), at 2,346,063 to 2,346,737 _1970 Position (kb) 2343 2344 2345 2346Strain fitness (log2 ratio) -1 0 1at 2346.117 kb on - strandat 2346.119 kb on + strandat 2346.127 kb on - strandat 2346.151 kb on + strand, within Shewana3_1970at 2346.176 kb on + strand, within Shewana3_1970at 2346.230 kb on + strand, within Shewana3_1970at 2346.295 kb on + strand, within Shewana3_1970at 2346.341 kb on + strand, within Shewana3_1970at 2346.356 kb on + strand, within Shewana3_1970at 2346.521 kb on + strandat 2346.545 kb on - strand, within Shewana3_1970

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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2,346,117 - +0.5
2,346,119 + -0.5
2,346,127 - +0.5
2,346,151 + Shewana3_1970 0.13 +0.5
2,346,176 + Shewana3_1970 0.17 +1.5
2,346,230 + Shewana3_1970 0.25 +0.5
2,346,295 + Shewana3_1970 0.34 +0.5
2,346,341 + Shewana3_1970 0.41 +0.5
2,346,356 + Shewana3_1970 0.43 +0.5
2,346,521 + +0.5
2,346,545 - Shewana3_1970 0.71 +0.5

Or see this region's nucleotide sequence