Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1905 and Shewana3_1906 are separated by 28 nucleotides Shewana3_1906 and Shewana3_1907 are separated by 82 nucleotides Shewana3_1907 and Shewana3_1908 are separated by 19 nucleotides
Shewana3_1905: Shewana3_1905 - hypothetical protein (RefSeq), at 2,262,462 to 2,262,698
_1905
Shewana3_1906: Shewana3_1906 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,262,727 to 2,263,464
_1906
Shewana3_1907: Shewana3_1907 - iron-containing alcohol dehydrogenase (RefSeq), at 2,263,547 to 2,264,617
_1907
Shewana3_1908: Shewana3_1908 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,264,637 to 2,265,824
_1908
Position (kb)
2263
2264
2265 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2262.646 kb on - strand, within Shewana3_1905 at 2262.745 kb on - strand at 2264.044 kb on - strand, within Shewana3_1907 at 2264.054 kb on - strand, within Shewana3_1907 at 2264.105 kb on + strand, within Shewana3_1907 at 2264.161 kb on - strand, within Shewana3_1907 at 2264.166 kb on - strand, within Shewana3_1907 at 2264.408 kb on - strand, within Shewana3_1907 at 2264.408 kb on - strand, within Shewana3_1907 at 2264.408 kb on - strand, within Shewana3_1907 at 2264.432 kb on - strand, within Shewana3_1907 at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.820 kb on - strand, within Shewana3_1908 at 2264.923 kb on - strand, within Shewana3_1908 at 2265.095 kb on - strand, within Shewana3_1908 at 2265.299 kb on - strand, within Shewana3_1908 at 2265.587 kb on - strand, within Shewana3_1908
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 2,262,646 - Shewana3_1905 0.78 +0.6 2,262,745 - +0.5 2,264,044 - Shewana3_1907 0.46 +0.7 2,264,054 - Shewana3_1907 0.47 -1.1 2,264,105 + Shewana3_1907 0.52 +0.5 2,264,161 - Shewana3_1907 0.57 +0.6 2,264,166 - Shewana3_1907 0.58 +2.8 2,264,408 - Shewana3_1907 0.80 +2.8 2,264,408 - Shewana3_1907 0.80 -0.1 2,264,408 - Shewana3_1907 0.80 +0.5 2,264,432 - Shewana3_1907 0.83 +0.2 2,264,531 - -0.9 2,264,531 - -0.5 2,264,531 - +0.5 2,264,531 - +0.5 2,264,531 - +0.5 2,264,820 - Shewana3_1908 0.15 +0.7 2,264,923 - Shewana3_1908 0.24 -0.5 2,265,095 - Shewana3_1908 0.39 -0.2 2,265,299 - Shewana3_1908 0.56 +0.5 2,265,587 - Shewana3_1908 0.80 +0.0
Or see this region's nucleotide sequence