Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1618

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1617 and Shewana3_1618 are separated by 327 nucleotidesShewana3_1618 and Shewana3_1619 are separated by 16 nucleotides Shewana3_1617: Shewana3_1617 - hypothetical protein (RefSeq), at 1,902,543 to 1,903,385 _1617 Shewana3_1618: Shewana3_1618 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 1,903,713 to 1,904,345 _1618 Shewana3_1619: Shewana3_1619 - serine/threonine protein kinase (RefSeq), at 1,904,362 to 1,907,187 _1619 Position (kb) 1903 1904 1905Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1902.717 kb on + strand, within Shewana3_1617at 1902.719 kb on + strand, within Shewana3_1617at 1902.719 kb on + strand, within Shewana3_1617at 1902.719 kb on + strand, within Shewana3_1617at 1902.719 kb on + strand, within Shewana3_1617at 1902.727 kb on - strand, within Shewana3_1617at 1902.727 kb on - strand, within Shewana3_1617at 1902.729 kb on + strand, within Shewana3_1617at 1902.729 kb on + strand, within Shewana3_1617at 1902.737 kb on + strand, within Shewana3_1617at 1902.737 kb on + strand, within Shewana3_1617at 1902.737 kb on + strand, within Shewana3_1617at 1902.737 kb on - strand, within Shewana3_1617at 1902.737 kb on - strand, within Shewana3_1617at 1902.737 kb on - strand, within Shewana3_1617at 1902.775 kb on + strand, within Shewana3_1617at 1902.775 kb on + strand, within Shewana3_1617at 1902.775 kb on + strand, within Shewana3_1617at 1902.783 kb on - strand, within Shewana3_1617at 1902.783 kb on - strand, within Shewana3_1617at 1902.790 kb on - strand, within Shewana3_1617at 1902.806 kb on - strand, within Shewana3_1617at 1902.820 kb on + strand, within Shewana3_1617at 1902.854 kb on + strand, within Shewana3_1617at 1902.872 kb on + strand, within Shewana3_1617at 1902.872 kb on + strand, within Shewana3_1617at 1902.872 kb on + strand, within Shewana3_1617at 1902.872 kb on + strand, within Shewana3_1617at 1902.872 kb on + strand, within Shewana3_1617at 1902.872 kb on + strand, within Shewana3_1617at 1902.872 kb on + strand, within Shewana3_1617at 1902.872 kb on + strand, within Shewana3_1617at 1902.872 kb on + strand, within Shewana3_1617at 1902.872 kb on + strand, within Shewana3_1617at 1902.872 kb on + strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.880 kb on - strand, within Shewana3_1617at 1902.882 kb on + strand, within Shewana3_1617at 1902.882 kb on + strand, within Shewana3_1617at 1902.882 kb on + strand, within Shewana3_1617at 1902.882 kb on + strand, within Shewana3_1617at 1902.882 kb on + strand, within Shewana3_1617at 1902.882 kb on + strand, within Shewana3_1617at 1902.882 kb on + strand, within Shewana3_1617at 1902.882 kb on + strand, within Shewana3_1617at 1902.883 kb on - strand, within Shewana3_1617at 1902.885 kb on - strand, within Shewana3_1617at 1902.885 kb on - strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.887 kb on + strand, within Shewana3_1617at 1902.889 kb on + strand, within Shewana3_1617at 1902.889 kb on + strand, within Shewana3_1617at 1902.889 kb on + strand, within Shewana3_1617at 1902.889 kb on + strand, within Shewana3_1617at 1902.889 kb on + strand, within Shewana3_1617at 1902.889 kb on + strand, within Shewana3_1617at 1902.889 kb on + strand, within Shewana3_1617at 1902.890 kb on - strand, within Shewana3_1617at 1902.890 kb on - strand, within Shewana3_1617at 1902.890 kb on - strand, within Shewana3_1617at 1902.890 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.895 kb on - strand, within Shewana3_1617at 1902.897 kb on - strand, within Shewana3_1617at 1902.897 kb on - strand, within Shewana3_1617at 1902.897 kb on - strand, within Shewana3_1617at 1902.897 kb on - strand, within Shewana3_1617at 1902.897 kb on - strand, within Shewana3_1617at 1902.897 kb on - strand, within Shewana3_1617at 1902.897 kb on - strand, within Shewana3_1617at 1902.926 kb on - strand, within Shewana3_1617at 1902.932 kb on - strand, within Shewana3_1617at 1903.022 kb on + strand, within Shewana3_1617at 1903.022 kb on + strand, within Shewana3_1617at 1903.030 kb on - strand, within Shewana3_1617at 1903.039 kb on + strand, within Shewana3_1617at 1903.047 kb on - strand, within Shewana3_1617at 1903.049 kb on + strand, within Shewana3_1617at 1903.049 kb on + strand, within Shewana3_1617at 1903.049 kb on + strand, within Shewana3_1617at 1903.057 kb on - strand, within Shewana3_1617at 1903.057 kb on - strand, within Shewana3_1617at 1903.057 kb on - strand, within Shewana3_1617at 1903.057 kb on - strand, within Shewana3_1617at 1903.057 kb on - strand, within Shewana3_1617at 1903.057 kb on - strand, within Shewana3_1617at 1903.083 kb on - strand, within Shewana3_1617at 1903.101 kb on + strand, within Shewana3_1617at 1903.188 kb on - strand, within Shewana3_1617at 1903.239 kb on + strand, within Shewana3_1617at 1903.250 kb on + strand, within Shewana3_1617at 1903.313 kb on + strandat 1903.321 kb on - strandat 1903.321 kb on - strandat 1903.336 kb on + strandat 1903.336 kb on + strandat 1903.336 kb on + strandat 1903.336 kb on + strandat 1903.336 kb on + strandat 1903.336 kb on + strandat 1903.336 kb on + strandat 1903.336 kb on + strandat 1903.336 kb on + strandat 1903.336 kb on + strandat 1903.341 kb on + strandat 1903.344 kb on - strandat 1903.344 kb on - strandat 1903.344 kb on - strandat 1903.354 kb on - strandat 1903.378 kb on - strandat 1903.387 kb on + strandat 1903.395 kb on - strandat 1903.432 kb on - strandat 1903.432 kb on - strandat 1903.496 kb on - strandat 1903.501 kb on - strandat 1903.679 kb on - strandat 1903.778 kb on - strand, within Shewana3_1618at 1903.804 kb on + strand, within Shewana3_1618at 1903.907 kb on + strand, within Shewana3_1618at 1903.909 kb on - strand, within Shewana3_1618at 1903.937 kb on + strand, within Shewana3_1618at 1903.945 kb on - strand, within Shewana3_1618at 1903.963 kb on + strand, within Shewana3_1618at 1903.971 kb on - strand, within Shewana3_1618at 1903.999 kb on + strand, within Shewana3_1618at 1904.007 kb on - strand, within Shewana3_1618at 1904.325 kb on + strandat 1904.547 kb on - strandat 1904.547 kb on - strandat 1904.608 kb on + strandat 1904.611 kb on - strandat 1904.616 kb on - strandat 1904.616 kb on - strandat 1904.743 kb on + strand, within Shewana3_1619at 1904.751 kb on - strand, within Shewana3_1619at 1904.926 kb on - strand, within Shewana3_1619at 1905.050 kb on - strand, within Shewana3_1619at 1905.057 kb on + strand, within Shewana3_1619at 1905.220 kb on - strand, within Shewana3_1619at 1905.234 kb on + strand, within Shewana3_1619at 1905.250 kb on - strand, within Shewana3_1619at 1905.300 kb on - strand, within Shewana3_1619

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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1,902,717 + Shewana3_1617 0.21 +0.5
1,902,719 + Shewana3_1617 0.21 +0.5
1,902,719 + Shewana3_1617 0.21 +0.5
1,902,719 + Shewana3_1617 0.21 +0.5
1,902,719 + Shewana3_1617 0.21 -0.5
1,902,727 - Shewana3_1617 0.22 +0.5
1,902,727 - Shewana3_1617 0.22 +0.5
1,902,729 + Shewana3_1617 0.22 +2.1
1,902,729 + Shewana3_1617 0.22 -0.5
1,902,737 + Shewana3_1617 0.23 -0.5
1,902,737 + Shewana3_1617 0.23 +0.5
1,902,737 + Shewana3_1617 0.23 +0.5
1,902,737 - Shewana3_1617 0.23 -0.5
1,902,737 - Shewana3_1617 0.23 +0.5
1,902,737 - Shewana3_1617 0.23 +0.5
1,902,775 + Shewana3_1617 0.28 +0.5
1,902,775 + Shewana3_1617 0.28 -0.5
1,902,775 + Shewana3_1617 0.28 +0.5
1,902,783 - Shewana3_1617 0.28 +0.5
1,902,783 - Shewana3_1617 0.28 +2.1
1,902,790 - Shewana3_1617 0.29 +0.5
1,902,806 - Shewana3_1617 0.31 +0.5
1,902,820 + Shewana3_1617 0.33 -0.5
1,902,854 + Shewana3_1617 0.37 +0.5
1,902,872 + Shewana3_1617 0.39 +0.7
1,902,872 + Shewana3_1617 0.39 +0.5
1,902,872 + Shewana3_1617 0.39 +0.5
1,902,872 + Shewana3_1617 0.39 -0.2
1,902,872 + Shewana3_1617 0.39 +0.5
1,902,872 + Shewana3_1617 0.39 -1.1
1,902,872 + Shewana3_1617 0.39 +0.5
1,902,872 + Shewana3_1617 0.39 +0.5
1,902,872 + Shewana3_1617 0.39 -0.5
1,902,872 + Shewana3_1617 0.39 -2.1
1,902,872 + Shewana3_1617 0.39 -1.1
1,902,880 - Shewana3_1617 0.40 -0.5
1,902,880 - Shewana3_1617 0.40 +0.5
1,902,880 - Shewana3_1617 0.40 +0.5
1,902,880 - Shewana3_1617 0.40 +0.5
1,902,880 - Shewana3_1617 0.40 -0.7
1,902,880 - Shewana3_1617 0.40 +0.5
1,902,880 - Shewana3_1617 0.40 +0.5
1,902,880 - Shewana3_1617 0.40 +0.5
1,902,880 - Shewana3_1617 0.40 -0.5
1,902,880 - Shewana3_1617 0.40 +0.5
1,902,880 - Shewana3_1617 0.40 +0.5
1,902,880 - Shewana3_1617 0.40 +0.5
1,902,880 - Shewana3_1617 0.40 +0.5
1,902,882 + Shewana3_1617 0.40 +0.5
1,902,882 + Shewana3_1617 0.40 -0.5
1,902,882 + Shewana3_1617 0.40 +0.5
1,902,882 + Shewana3_1617 0.40 -0.5
1,902,882 + Shewana3_1617 0.40 +0.5
1,902,882 + Shewana3_1617 0.40 +0.5
1,902,882 + Shewana3_1617 0.40 +2.5
1,902,882 + Shewana3_1617 0.40 +0.5
1,902,883 - Shewana3_1617 0.40 +0.5
1,902,885 - Shewana3_1617 0.41 +0.5
1,902,885 - Shewana3_1617 0.41 -0.5
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 -1.1
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 +1.5
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 -1.1
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,887 + Shewana3_1617 0.41 -0.5
1,902,887 + Shewana3_1617 0.41 +0.5
1,902,889 + Shewana3_1617 0.41 -1.1
1,902,889 + Shewana3_1617 0.41 -0.5
1,902,889 + Shewana3_1617 0.41 +0.5
1,902,889 + Shewana3_1617 0.41 +0.5
1,902,889 + Shewana3_1617 0.41 -0.0
1,902,889 + Shewana3_1617 0.41 +0.5
1,902,889 + Shewana3_1617 0.41 +0.5
1,902,890 - Shewana3_1617 0.41 +1.5
1,902,890 - Shewana3_1617 0.41 +0.5
1,902,890 - Shewana3_1617 0.41 +0.5
1,902,890 - Shewana3_1617 0.41 -0.5
1,902,895 - Shewana3_1617 0.42 +0.5
1,902,895 - Shewana3_1617 0.42 +0.5
1,902,895 - Shewana3_1617 0.42 +0.5
1,902,895 - Shewana3_1617 0.42 +0.5
1,902,895 - Shewana3_1617 0.42 +1.5
1,902,895 - Shewana3_1617 0.42 +0.5
1,902,895 - Shewana3_1617 0.42 +1.5
1,902,895 - Shewana3_1617 0.42 -0.5
1,902,895 - Shewana3_1617 0.42 +0.5
1,902,895 - Shewana3_1617 0.42 +1.7
1,902,895 - Shewana3_1617 0.42 -0.5
1,902,895 - Shewana3_1617 0.42 -0.5
1,902,895 - Shewana3_1617 0.42 +0.5
1,902,895 - Shewana3_1617 0.42 +0.5
1,902,897 - Shewana3_1617 0.42 -1.1
1,902,897 - Shewana3_1617 0.42 +0.5
1,902,897 - Shewana3_1617 0.42 +0.5
1,902,897 - Shewana3_1617 0.42 +0.5
1,902,897 - Shewana3_1617 0.42 -1.5
1,902,897 - Shewana3_1617 0.42 +1.5
1,902,897 - Shewana3_1617 0.42 +0.5
1,902,926 - Shewana3_1617 0.45 +0.5
1,902,932 - Shewana3_1617 0.46 +0.5
1,903,022 + Shewana3_1617 0.57 -0.1
1,903,022 + Shewana3_1617 0.57 +0.5
1,903,030 - Shewana3_1617 0.58 +2.1
1,903,039 + Shewana3_1617 0.59 +0.8
1,903,047 - Shewana3_1617 0.60 -0.5
1,903,049 + Shewana3_1617 0.60 -0.5
1,903,049 + Shewana3_1617 0.60 +0.5
1,903,049 + Shewana3_1617 0.60 -0.5
1,903,057 - Shewana3_1617 0.61 +0.5
1,903,057 - Shewana3_1617 0.61 +0.5
1,903,057 - Shewana3_1617 0.61 -0.5
1,903,057 - Shewana3_1617 0.61 +0.5
1,903,057 - Shewana3_1617 0.61 -0.5
1,903,057 - Shewana3_1617 0.61 +2.1
1,903,083 - Shewana3_1617 0.64 -0.5
1,903,101 + Shewana3_1617 0.66 +0.5
1,903,188 - Shewana3_1617 0.77 +0.5
1,903,239 + Shewana3_1617 0.83 +0.5
1,903,250 + Shewana3_1617 0.84 +0.2
1,903,313 + -1.5
1,903,321 - +0.5
1,903,321 - +0.5
1,903,336 + +2.5
1,903,336 + +0.1
1,903,336 + +0.9
1,903,336 + +0.5
1,903,336 + -0.3
1,903,336 + -1.5
1,903,336 + +1.5
1,903,336 + -0.5
1,903,336 + -1.9
1,903,336 + +0.1
1,903,341 + +0.5
1,903,344 - +0.5
1,903,344 - +0.5
1,903,344 - -0.5
1,903,354 - +0.5
1,903,378 - +0.5
1,903,387 + +2.1
1,903,395 - +0.5
1,903,432 - -1.1
1,903,432 - -0.5
1,903,496 - +0.5
1,903,501 - -0.5
1,903,679 - +0.5
1,903,778 - Shewana3_1618 0.10 +0.5
1,903,804 + Shewana3_1618 0.14 +0.5
1,903,907 + Shewana3_1618 0.31 +0.5
1,903,909 - Shewana3_1618 0.31 +0.5
1,903,937 + Shewana3_1618 0.35 -0.9
1,903,945 - Shewana3_1618 0.37 +0.5
1,903,963 + Shewana3_1618 0.39 +0.5
1,903,971 - Shewana3_1618 0.41 -3.7
1,903,999 + Shewana3_1618 0.45 +0.9
1,904,007 - Shewana3_1618 0.46 -3.2
1,904,325 + +0.5
1,904,547 - +0.5
1,904,547 - -0.5
1,904,608 + +0.5
1,904,611 - +0.5
1,904,616 - +0.5
1,904,616 - +0.5
1,904,743 + Shewana3_1619 0.13 -0.9
1,904,751 - Shewana3_1619 0.14 +0.5
1,904,926 - Shewana3_1619 0.20 +0.4
1,905,050 - Shewana3_1619 0.24 +0.4
1,905,057 + Shewana3_1619 0.25 -0.6
1,905,220 - Shewana3_1619 0.30 +0.4
1,905,234 + Shewana3_1619 0.31 +0.4
1,905,250 - Shewana3_1619 0.31 +0.4
1,905,300 - Shewana3_1619 0.33 +0.4

Or see this region's nucleotide sequence