Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1483 and Shewana3_1484 are separated by 127 nucleotides Shewana3_1484 and Shewana3_1485 are separated by 364 nucleotides Shewana3_1485 and Shewana3_1486 are separated by 199 nucleotides
Shewana3_1483: Shewana3_1483 - amidophosphoribosyltransferase (RefSeq), at 1,725,902 to 1,727,416
_1483
Shewana3_1484: Shewana3_1484 - amino acid carrier protein (RefSeq), at 1,727,544 to 1,729,028
_1484
Shewana3_1485: Shewana3_1485 - hypothetical protein (RefSeq), at 1,729,393 to 1,729,680
_1485
Shewana3_1486: Shewana3_1486 - DNA topoisomerase III (RefSeq), at 1,729,880 to 1,731,994
_1486
Position (kb)
1727
1728
1729
1730 Strain fitness (log2 ratio)
-1
0
1 at 1726.545 kb on + strand, within Shewana3_1483 at 1726.606 kb on + strand, within Shewana3_1483 at 1726.798 kb on + strand, within Shewana3_1483 at 1726.852 kb on - strand, within Shewana3_1483 at 1726.901 kb on - strand, within Shewana3_1483 at 1726.995 kb on + strand, within Shewana3_1483 at 1727.244 kb on + strand, within Shewana3_1483 at 1727.311 kb on + strand at 1727.452 kb on - strand at 1727.471 kb on - strand at 1727.584 kb on + strand at 1727.668 kb on - strand at 1727.701 kb on - strand, within Shewana3_1484 at 1728.023 kb on - strand, within Shewana3_1484 at 1728.051 kb on - strand, within Shewana3_1484 at 1728.148 kb on + strand, within Shewana3_1484 at 1728.388 kb on + strand, within Shewana3_1484 at 1728.627 kb on + strand, within Shewana3_1484 at 1728.655 kb on + strand, within Shewana3_1484 at 1728.866 kb on + strand, within Shewana3_1484 at 1729.138 kb on + strand at 1729.284 kb on - strand at 1729.403 kb on + strand at 1729.634 kb on + strand, within Shewana3_1485 at 1729.642 kb on - strand, within Shewana3_1485 at 1729.658 kb on - strand at 1729.835 kb on - strand at 1729.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 1,726,545 + Shewana3_1483 0.42 +0.5 1,726,606 + Shewana3_1483 0.46 +1.5 1,726,798 + Shewana3_1483 0.59 -0.8 1,726,852 - Shewana3_1483 0.63 +0.5 1,726,901 - Shewana3_1483 0.66 +0.5 1,726,995 + Shewana3_1483 0.72 +0.2 1,727,244 + Shewana3_1483 0.89 -0.4 1,727,311 + -0.4 1,727,452 - +0.5 1,727,471 - -0.5 1,727,584 + +0.5 1,727,668 - +0.3 1,727,701 - Shewana3_1484 0.11 -0.9 1,728,023 - Shewana3_1484 0.32 -0.7 1,728,051 - Shewana3_1484 0.34 -1.1 1,728,148 + Shewana3_1484 0.41 +0.5 1,728,388 + Shewana3_1484 0.57 +1.5 1,728,627 + Shewana3_1484 0.73 -0.5 1,728,655 + Shewana3_1484 0.75 +0.5 1,728,866 + Shewana3_1484 0.89 +0.5 1,729,138 + +0.5 1,729,284 - +0.5 1,729,403 + -0.5 1,729,634 + Shewana3_1485 0.84 +0.5 1,729,642 - Shewana3_1485 0.86 +0.5 1,729,658 - -1.3 1,729,835 - +0.5 1,729,936 + +0.5
Or see this region's nucleotide sequence