Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1429

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1428 and Shewana3_1429 are separated by 336 nucleotidesShewana3_1429 and Shewana3_1430 are separated by 111 nucleotidesShewana3_1430 and Shewana3_1431 are separated by 113 nucleotides Shewana3_1428: Shewana3_1428 - oxidoreductase domain-containing protein (RefSeq), at 1,658,274 to 1,659,653 _1428 Shewana3_1429: Shewana3_1429 - hypothetical protein (RefSeq), at 1,659,990 to 1,660,424 _1429 Shewana3_1430: Shewana3_1430 - pseudouridine synthase (RefSeq), at 1,660,536 to 1,661,207 _1430 Shewana3_1431: Shewana3_1431 - redoxin domain-containing protein (RefSeq), at 1,661,321 to 1,661,875 _1431 Position (kb) 1659 1660 1661Strain fitness (log2 ratio) -1 0 1at 1659.013 kb on - strand, within Shewana3_1428at 1659.013 kb on - strand, within Shewana3_1428at 1659.028 kb on + strand, within Shewana3_1428at 1659.152 kb on - strand, within Shewana3_1428at 1659.203 kb on + strand, within Shewana3_1428at 1659.206 kb on - strand, within Shewana3_1428at 1659.464 kb on + strand, within Shewana3_1428at 1659.550 kb on - strandat 1659.586 kb on + strandat 1659.994 kb on + strandat 1660.256 kb on + strand, within Shewana3_1429at 1660.481 kb on - strandat 1660.548 kb on - strandat 1660.556 kb on - strandat 1660.670 kb on - strand, within Shewana3_1430at 1660.782 kb on + strand, within Shewana3_1430at 1660.917 kb on + strand, within Shewana3_1430at 1660.950 kb on - strand, within Shewana3_1430at 1660.955 kb on - strand, within Shewana3_1430at 1661.327 kb on - strandat 1661.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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1,659,013 - Shewana3_1428 0.54 +0.4
1,659,013 - Shewana3_1428 0.54 +0.4
1,659,028 + Shewana3_1428 0.55 +0.4
1,659,152 - Shewana3_1428 0.64 +0.4
1,659,203 + Shewana3_1428 0.67 -0.1
1,659,206 - Shewana3_1428 0.68 -0.6
1,659,464 + Shewana3_1428 0.86 -0.1
1,659,550 - +1.4
1,659,586 + +0.6
1,659,994 + +1.0
1,660,256 + Shewana3_1429 0.61 -1.0
1,660,481 - +0.4
1,660,548 - -0.4
1,660,556 - -0.3
1,660,670 - Shewana3_1430 0.20 +0.2
1,660,782 + Shewana3_1430 0.37 -0.1
1,660,917 + Shewana3_1430 0.57 -0.6
1,660,950 - Shewana3_1430 0.62 -0.3
1,660,955 - Shewana3_1430 0.62 -0.5
1,661,327 - +0.4
1,661,327 - +0.5

Or see this region's nucleotide sequence