Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1428 and Shewana3_1429 are separated by 336 nucleotides Shewana3_1429 and Shewana3_1430 are separated by 111 nucleotides Shewana3_1430 and Shewana3_1431 are separated by 113 nucleotides
Shewana3_1428: Shewana3_1428 - oxidoreductase domain-containing protein (RefSeq), at 1,658,274 to 1,659,653
_1428
Shewana3_1429: Shewana3_1429 - hypothetical protein (RefSeq), at 1,659,990 to 1,660,424
_1429
Shewana3_1430: Shewana3_1430 - pseudouridine synthase (RefSeq), at 1,660,536 to 1,661,207
_1430
Shewana3_1431: Shewana3_1431 - redoxin domain-containing protein (RefSeq), at 1,661,321 to 1,661,875
_1431
Position (kb)
1659
1660
1661 Strain fitness (log2 ratio)
-1
0
1 at 1659.013 kb on - strand, within Shewana3_1428 at 1659.013 kb on - strand, within Shewana3_1428 at 1659.028 kb on + strand, within Shewana3_1428 at 1659.152 kb on - strand, within Shewana3_1428 at 1659.203 kb on + strand, within Shewana3_1428 at 1659.206 kb on - strand, within Shewana3_1428 at 1659.464 kb on + strand, within Shewana3_1428 at 1659.550 kb on - strand at 1659.586 kb on + strand at 1659.994 kb on + strand at 1660.256 kb on + strand, within Shewana3_1429 at 1660.481 kb on - strand at 1660.548 kb on - strand at 1660.556 kb on - strand at 1660.670 kb on - strand, within Shewana3_1430 at 1660.782 kb on + strand, within Shewana3_1430 at 1660.917 kb on + strand, within Shewana3_1430 at 1660.950 kb on - strand, within Shewana3_1430 at 1660.955 kb on - strand, within Shewana3_1430 at 1661.327 kb on - strand at 1661.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 1,659,013 - Shewana3_1428 0.54 +0.4 1,659,013 - Shewana3_1428 0.54 +0.4 1,659,028 + Shewana3_1428 0.55 +0.4 1,659,152 - Shewana3_1428 0.64 +0.4 1,659,203 + Shewana3_1428 0.67 -0.1 1,659,206 - Shewana3_1428 0.68 -0.6 1,659,464 + Shewana3_1428 0.86 -0.1 1,659,550 - +1.4 1,659,586 + +0.6 1,659,994 + +1.0 1,660,256 + Shewana3_1429 0.61 -1.0 1,660,481 - +0.4 1,660,548 - -0.4 1,660,556 - -0.3 1,660,670 - Shewana3_1430 0.20 +0.2 1,660,782 + Shewana3_1430 0.37 -0.1 1,660,917 + Shewana3_1430 0.57 -0.6 1,660,950 - Shewana3_1430 0.62 -0.3 1,660,955 - Shewana3_1430 0.62 -0.5 1,661,327 - +0.4 1,661,327 - +0.5
Or see this region's nucleotide sequence